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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

organism: Staphylococcus aureus N315

locus tag: SA1471 [new locus tag: SA_RS08285 ]

pan locus tag^?: SAUPAN004251000

symbol: rpmA

pan gene symbol^?: rpmA

synonym:
product: 50S ribosomal protein L27

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

type: CDS
locus tag: SA1471 [new locus tag: SA_RS08285 ]
symbol: rpmA
product: 50S ribosomal protein L27
replicon: chromosome
strand: -
coordinates: 1680058..1680342
length: 285
essential: yes DEG other strains

⊟Accession numbers[edit | edit source]

Gene ID: 1124315 NCBI
RefSeq: NP_374758 NCBI
BioCyc: see SA_RS08285
MicrobesOnline: 103784 MicrobesOnline

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

1
61
121
181
241
ATGTTAAAATTAAACTTACAATTCTTCGCATCTAAAAAAGGGGTAAGTTCTACAAAAAAC
GGACGTGACTCTGAATCAAAACGCTTAGGTGCTAAACGTGCTGACGGTCAATTCGTAACA
GGTGGTTCAATTTTATATCGCCAACGTGGTACTAAAATTTACCCTGGTGAAAATGTAGGT
CGTGGTGGCGATGATACATTATTCGCTAAAATCGACGGCGTTGTTAAATTCGAACGTAAA
GGTCGCGACAAAAAACAAGTTTCTGTATATGCAGTAGCTGAATAA
60
120
180
240
285

⊟Protein[edit | edit source]

Protein Data Bank: 4WCE

⊟General[edit | edit source]

locus tag: SA1471 [new locus tag: SA_RS08285 ]
symbol: RpmA
description: 50S ribosomal protein L27
length: 94
theoretical pI: 10.8424
theoretical MW: 10314.7
GRAVY: -0.689362

⊟Function[edit | edit source]

TIGRFAM:
Genetic information processing Protein synthesis Ribosomal proteins: synthesis and modification ribosomal protein bL27 (TIGR00062; HMM-score: 132.7)
TheSEED :
- LSU ribosomal protein L27p
Protein Metabolism Protein biosynthesis Ribosome LSU bacterial LSU ribosomal protein L27p
PFAM:
no clan defined Ribosomal_L27; Ribosomal L27 protein (PF01016; HMM-score: 119.2)

⊟Structure, modifications & cofactors[edit | edit source]

domains:
modifications:
cofactors:
effectors:

⊟Localization[edit | edit source]

⊞
PSORTb: Cytoplasmic
- Cytoplasmic Score: 10
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 0
⊞
DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.7651
- Cytoplasmic Membrane Score: 0.0033
- Cell wall & surface Score: 0.0002
- Extracellular Score: 0.2314
⊞
LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
⊞
SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.021947
- TAT(Tat/SPI): 0.003805
- LIPO(Sec/SPII): 0.0037
predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

GI: 15927225 NCBI
RefSeq: NP_374758 NCBI
UniProt: P66133 UniProt

⊟Protein sequence[edit | edit source]

MLKLNLQFFASKKGVSSTKNGRDSESKRLGAKRADGQFVTGGSILYRQRGTKIYPGENVGRGGDDTLFAKIDGVVKFERKGRDKKQVSVYAVAE

⊟Experimental data[edit | edit source]

experimentally validated: data available for COL, NCTC8325
protein localization: data available for COL
quantitative data / protein copy number per cell: data available for COL
interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

MicrobesOnline: rpmA < SA1472 < rplU

⊟Regulation[edit | edit source]

regulator:

⊟Transcription pattern[edit | edit source]

S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

Aureolib: no data available

⊟Protein stability[edit | edit source]

half-life: no data available

⊞Biological Material[edit | edit source]

⊞Other Information[edit | edit source]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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