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NCBI: 03-AUG-2016
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus NCTC8325
- locus tag: SAOUHSC_01069
- pan locus tag?: SAUPAN003346000
- symbol: SAOUHSC_01069
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAOUHSC_01069
- symbol: SAOUHSC_01069
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 1035477..1036514
- length: 1038
- essential: no DEG other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3921731 NCBI
- RefSeq: YP_499615 NCBI
- BioCyc: G1I0R-1005 BioCyc
- MicrobesOnline: 1289528 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1021ATGAAAAAGTTAATTATAAGAGTCGTCGGTGTATTATTTTTAGTTGGATTTTTAATATAT
CTTTTTTATTCACCGAGATTAAAATTTGATGTATTAGAGAACCCGAATAAAGGTAATAAA
GTAAATAGATCTGAACAGGTGAATAAATCAAATAACCATGCTGAAAATCCAAAGCCTAAA
GAAGGTGTTGGTACATGGGTAGGTAAAGATATTAAAGTGCTTACTTCTAAATTTGGACAA
GCAGATCGTGTCTACCCTTTTAGAGATGGTTACAAAAATTATGTGTTTAAAGACAAAAAC
AGTTATTACATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAG
AAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACA
AGTATTAATCCAGAACCGTCCTTTAAAGTTGATGGTAAAAAATATGAATTTGAACTTTCA
GATGAAGATTTAAAAACACAAACACTGATTAAATATGGCGACATATATGCACAAGTGTAT
TCTGATCAACAATCGAAAAAGGTGCTAAGTGTACGATTTTTAACAAAAGAAATGTTAGCA
GATATTGAACCTTATCAATTAAATTCTAATTCTACGTCAGAAGAGCATAATAAGCGTCCA
GTTGAGCAAAATCCAAATCAATTAATTTCTCTTTATGAAGTAACGAATGAAATGAGAAAA
TTAAAAGGATTAAAACCATTGAAAATCAATAGCGATTTAGCACATATTGCATCTAATAAC
TTATATGAAGCGACCTCTAATGGTTCTGATAGTGTTGAATTTACAGAGGACGCATTAAGA
GGGCAATTAGATAAAAATCACGTTACTTATAAAACAACTGCTCAAAATGTTGGTTATGCG
TTTAATGATGTACCAACATTAATCCATAGTTGGATGAATTCAGATATACATCGATCTCGT
CTATTAAATTCAAAATACGATGAGATGGGTGGAGATGTAATGAGAGATTATTATTCACTA
ATTTTCTTAGAAAAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAOUHSC_01069
- symbol: SAOUHSC_01069
- description: hypothetical protein
- length: 345
- theoretical pI: 9.05924
- theoretical MW: 39612.5
- GRAVY: -0.626377
⊟Function[edit | edit source]
- TIGRFAM: uncharacterized protein, YkwD family (TIGR02909; HMM-score: 44.8)
- TheSEED :
- Allergen V5/Tpx-1 related
- ⊞PFAM: no clan defined CAP_assoc_N; CAP-associated N-terminal (PF14504; HMM-score: 137.9)and 3 more
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKKLIIRVVGVLFLVGFLIYLFYSPRLKFDVLENPNKGNKVNRSEQVNKSNNHAENPKPKEGVGTWVGKDIKVLTSKFGQADRVYPFRDGYKNYVFKDKNSYYIVSTKREEIVSVYATGEKVNVSPLKIGQHSAEIFNHTSINPEPSFKVDGKKYEFELSDEDLKTQTLIKYGDIYAQVYSDQQSKKVLSVRFLTKEMLADIEPYQLNSNSTSEEHNKRPVEQNPNQLISLYEVTNEMRKLKGLKPLKINSDLAHIASNNLYEATSNGSDSVEFTEDALRGQLDKNHVTYKTTAQNVGYAFNDVPTLIHSWMNSDIHRSRLLNSKYDEMGGDVMRDYYSLIFLEK
⊟Experimental data[edit | edit source]
- experimentally validated: PeptideAtlas [1] [2]
- protein localization: data available for COL
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: SAOUHSC_01069 > SAOUHSC_01070predicted SigA promoter [3] : SAOUHSC_01066 > SAOUHSC_01067 > S439 > SAOUHSC_01068 > SAOUHSC_01069 > SAOUHSC_01070
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: [3]
⊟Multi-gene expression profiles
Click on any data point to display a description of the corresponding condition!
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊞Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊞Other Information[edit | edit source]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Maren Depke, Stephan Michalik, Alexander Rabe, Kristin Surmann, Lars Brinkmann, Nico Jehmlich, Jörg Bernhardt, Michael Hecker, Bernd Wollscheid, Zhi Sun, Robert L Moritz, Uwe Völker, Frank Schmidt
A peptide resource for the analysis of Staphylococcus aureus in host-pathogen interaction studies.
Proteomics: 2015, 15(21);3648-61
[PubMed:26224020] [WorldCat.org] [DOI] (I p) - ↑ Stephan Michalik, Maren Depke, Annette Murr, Manuela Gesell Salazar, Ulrike Kusebauch, Zhi Sun, Tanja C Meyer, Kristin Surmann, Henrike Pförtner, Petra Hildebrandt, Stefan Weiss, Laura Marcela Palma Medina, Melanie Gutjahr, Elke Hammer, Dörte Becher, Thomas Pribyl, Sven Hammerschmidt, Eric W Deutsch, Samuel L Bader, Michael Hecker, Robert L Moritz, Ulrike Mäder, Uwe Völker, Frank Schmidt
A global Staphylococcus aureus proteome resource applied to the in vivo characterization of host-pathogen interactions.
Sci Rep: 2017, 7(1);9718
[PubMed:28887440] [WorldCat.org] [DOI] (I e) - ↑ Jump up to: 3.0 3.1 3.2 Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
PLoS Genet: 2016, 12(4);e1005962
[PubMed:27035918] [WorldCat.org] [DOI] (I e)