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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1597 [new locus tag: SA_RS08995 ]
  • pan locus tag?: SAUPAN004475000
  • symbol: SA1597
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA1597 [new locus tag: SA_RS08995 ]
  • symbol: SA1597
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1835083..1835526
  • length: 444
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGAATAAAGCATCATTTGATAAAAAAGTTAAAAAGCAATTATGGTTTTTGAACAAGAAG
    GAGAAACAAGCATTAGATCAACGATTATCTTCTATATCTGATGATGACAGCGTTAACTTA
    AATAAGCCTGTTACCTTTGCTAATGCTTACTTAAGACAAAATGTATTTCGAAATAAAGAA
    ACAAAAAGTTATAGTATGTTTGTTACATTAGTAGTGATGATGTTTGCTTATGTTGCTTTA
    TTAGGCTTGTTTTTATTTGGGCTAATTACAAGTCTATCTGGCGTACAATTTTTCGTTAGT
    CCTAAGGTAGATTTATCAACAACTGTTGTTATTTTAACAATTATTGGAGCGATTTTATTA
    ATGATTGTTAGCATATATTTTATAAAAATTGTGACATCATACTTTACTAAGAAACTTTTA
    GAAATTAAATTTAATTCGAAATAG
    60
    120
    180
    240
    300
    360
    420
    444

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA1597 [new locus tag: SA_RS08995 ]
  • symbol: SA1597
  • description: hypothetical protein
  • length: 147
  • theoretical pI: 10.5648
  • theoretical MW: 16798.9
  • GRAVY: 0.385714

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Hypothetical protein SAV1779
  • ⊞PFAM:
    Transporter (CL0375) Claudin_2; PMP-22/EMP/MP20/Claudin tight junction (PF13903; HMM-score: 20.1)
    no clan defined DUF2207_C; Predicted membrane protein (DUF2207) C-terminal domain (PF20990; HMM-score: 17.1)
    and 6 more
    MS_channel_1st_1; Mechanosensitive ion channel, conserved TM helix (PF05552; HMM-score: 15.5)
    TPR (CL0020) DUF6584; Family of unknown function (DUF6584) (PF20225; HMM-score: 13.4)
    no clan defined DUF3671; Fam-L, Fam-M like protein (PF12420; HMM-score: 13.1)
    DUF378; Domain of unknown function (DUF378) (PF04070; HMM-score: 12.3)
    DUF7248; Family of unknown function (DUF7248) (PF23906; HMM-score: 9.7)
    DHHC; DHHC palmitoyltransferase (PF01529; HMM-score: 7.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.32
    • Cytoplasmic Membrane Score: 9.55
    • Cellwall Score: 0.12
    • Extracellular Score: 0.01
    • Internal Helices: 2
  • ⊞DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9961
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0038
  • ⊞LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008077
    • TAT(Tat/SPI): 0.000499
    • LIPO(Sec/SPII): 0.002155
  • predicted transmembrane helices (TMHMM): 2

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNKASFDKKVKKQLWFLNKKEKQALDQRLSSISDDDSVNLNKPVTFANAYLRQNVFRNKETKSYSMFVTLVVMMFAYVALLGLFLFGLITSLSGVQFFVSPKVDLSTTVVILTIIGAILLMIVSIYFIKIVTSYFTKKLLEIKFNSK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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