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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1573 [new locus tag: SA_RS08870 ]
  • pan locus tag?: SAUPAN004430000
  • symbol: SA1573
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA1573 [new locus tag: SA_RS08870 ]
  • symbol: SA1573
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1804376..1804798
  • length: 423
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGGCAAAAGGTAATTTATTTAAAGCGATTTTAGGTATAGGTGGCGCTGTAGCAGCTGTA
    CTTGTTACACGTAAAGATAGTCGTGACAAGCTGAAAGCAGAATATAATAAATATAAACAA
    GATCCTCAAAGCTATAAAGATAATGCTAAGGATAAAGCGACGCAATTAGGAACAATTGCT
    AATGAAACAATTAAAGAAGTAAAAACAAATCCGAAAGAATATGCTAATAGATTAAAAAAT
    AATCCAAAAGCATTTTTCGAAGAAGAAAAATCAAAATTTACCGAATATGACAATAAGACT
    GACGAAAGTATTGAAAAAGGTAAATTTGATGATGAAGGTGGCGCAGCACCAAATAATAAT
    TTACGTATCGTCACTGAAGAAGATTTAAAAAAGAATAAAAATGCATTATCTGATAAAGAA
    TAA
    60
    120
    180
    240
    300
    360
    420
    423

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA1573 [new locus tag: SA_RS08870 ]
  • symbol: SA1573
  • description: hypothetical protein
  • length: 140
  • theoretical pI: 9.49093
  • theoretical MW: 15734.5
  • GRAVY: -1.15

⊟Function[edit | edit source]

  • TIGRFAM:
    two transmembrane protein (TIGR04527; HMM-score: 18.5)
  • TheSEED  :
    • Hypothetical protein SAV1752
  • ⊞PFAM:
    no clan defined YtxH; YtxH-like protein (PF12732; HMM-score: 24.3)
    and 2 more
    SOGA; Protein SOGA (PF11365; HMM-score: 11.1)
    TMPIT; TMPIT-like protein (PF07851; HMM-score: 8.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0032
    • Cytoplasmic Membrane Score: 0.6967
    • Cell wall & surface Score: 0.126
    • Extracellular Score: 0.1742
  • ⊞LocateP: N-terminally anchored (No CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.5
    • Signal peptide possibility: -0.5
    • N-terminally Anchored Score: 5
    • Predicted Cleavage Site: No CleavageSite
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.307563
    • TAT(Tat/SPI): 0.078886
    • LIPO(Sec/SPII): 0.117906
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MAKGNLFKAILGIGGAVAAVLVTRKDSRDKLKAEYNKYKQDPQSYKDNAKDKATQLGTIANETIKEVKTNPKEYANRLKNNPKAFFEEEKSKFTEYDNKTDESIEKGKFDDEGGAAPNNNLRIVTEEDLKKNKNALSDKE

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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