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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0911 [new locus tag: SA_RS05165 ]
  • pan locus tag?: SAUPAN003268000
  • symbol: qoxC
  • pan gene symbol?: qoxC
  • synonym:
  • product: quinol oxidase polypeptide III QoxC

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA0911 [new locus tag: SA_RS05165 ]
  • symbol: qoxC
  • product: quinol oxidase polypeptide III QoxC
  • replicon: chromosome
  • strand: -
  • coordinates: 1035108..1035713
  • length: 606
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    ATGAGTCATGATACAAACACTATTGATTCACGCACACATGAAGGCGAATTAAATAAGCTT
    GGCTTTTGGATTTTCATTACAGCCGAATTTGCGTTATTCGGTACCCTATTTGCGACACTA
    TTAACTTTGCAACATGGTGGCGATTATGCAGGTAAAATGACTACTGAGTTATTTGAATTG
    CCTCTTGTTTTAATAATGACGTTTGCATTATTATTCAGTTCTTACACATGTGGTATTGCT
    ATTTACTACATGCGCCAAGAAAAACAAAAGTTAATGATGTTTTGGATGATCATTACGTTA
    CTTTTAGGTTTAGTCTTTGTTGGATTCGAAATTTATGAATTCGCACACTATGCATCAGAA
    GGCGTTAACCCAACAATTGGTTCTTACTGGTCTAGTTTCTTTATCCTATTAGGAACGCAT
    GGTTGTCACGTATCGCTAGGTATCGTTTGGGCCATTTGTTTATTAATCCAAATCCAACGA
    CGCGGATTAGACAAATATAATGCGCCAAAATTATTTATAGTAAGTTTATACTGGCACTTC
    TTAGATGTTGTTTGGGTTTTCATCTTTACTGCCGTATATATGATAGGGATGGTGTATAGC
    GGATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    606

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA0911 [new locus tag: SA_RS05165 ]
  • symbol: QoxC
  • description: quinol oxidase polypeptide III QoxC
  • length: 201
  • theoretical pI: 6.38351
  • theoretical MW: 23057
  • GRAVY: 0.666169

⊟Function[edit | edit source]

  • ⊞reaction:
    EC 1.10.3.-?  ExPASy
    2 a quinol + O2 = 2 a quinone + 2 H2O?
  • ⊞TIGRFAM:
    Metabolism Energy metabolism Electron transport cytochrome aa3 quinol oxidase, subunit III (TIGR02897; EC 1.10.3.-; HMM-score: 359)
    and 1 more
    Metabolism Energy metabolism Electron transport cytochrome o ubiquinol oxidase, subunit III (TIGR02842; EC 1.10.3.-; HMM-score: 188.3)
  • TheSEED  :
    • AA3-600 quinol oxidase subunit IIII
    Respiration Electron accepting reactions Terminal cytochrome C oxidases  quinol oxidase polypeptide III QoxC (EC:1.9.3.-)
  • ⊞PFAM:
    no clan defined COX3; Cytochrome c oxidase subunit III (PF00510; HMM-score: 51.6)
    and 2 more
    STE2; Fungal pheromone mating factor STE2 GPCR (PF02116; HMM-score: 18.6)
    PsbL; PsbL protein (PF02419; HMM-score: 13.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 5
  • ⊞DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9996
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0004
  • ⊞LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -0.5
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005078
    • TAT(Tat/SPI): 0.000723
    • LIPO(Sec/SPII): 0.001671
  • predicted transmembrane helices (TMHMM): 5

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSHDTNTIDSRTHEGELNKLGFWIFITAEFALFGTLFATLLTLQHGGDYAGKMTTELFELPLVLIMTFALLFSSYTCGIAIYYMRQEKQKLMMFWMIITLLLGLVFVGFEIYEFAHYASEGVNPTIGSYWSSFFILLGTHGCHVSLGIVWAICLLIQIQRRGLDKYNAPKLFIVSLYWHFLDVVWVFIFTAVYMIGMVYSG

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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