From AureoWiki
Revision as of 18:02, 10 March 2016 by AureoSysAdmin (talk | contribs) (Text replacement - "gene Genbank" to "gene RefSeq")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search

NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_1393 [new locus tag: NWMN_RS07860 ]
  • pan locus tag?: SAUPAN003950000
  • symbol: NWMN_1393
  • pan gene symbol?: ribU
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_1393 [new locus tag: NWMN_RS07860 ]
  • symbol: NWMN_1393
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1560929..1561474
  • length: 546
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGCAACAAAATAAACGTCTTATCACAATAAGTATGTTGAGCGCGATTGCGTTTGTGTTA
    ACTTTTATCAAGTTTCCTATACCATTTTTGCCACCATACTTAACTTTAGATTTTAGTGAT
    GTACCGTCACTACTAGCTACATTTACGTTTGGACCAGTTGCCGGTATCGTAGTTGCACTG
    GTTAAAAATTTATTGAACTACTTATTTAGTATGGGCGATCCAGTTGGACCATTTGCTAAC
    TTTTTAGCAGGCGCAAGTTTCTTATTAACTGCTTACGCCATCTATAAAAATAAACGTTCA
    ACAAAATCTTTGATTACTGGATTAATCATTGCAACAATCGTTATGACTATCGTGTTGAGT
    ATTTTGAACTATTTCGTTCTATTACCTTTGTACGGTATGATATTTAACTTAGCTGATATC
    GCAAATAATCTTAAAGTAATCATTGTTTCAGGAATTATACCATTCAATATTATTAAAGGT
    ATCGTTATTTCTATTGTATTTATTTTACTATATAGAAGGCTTGCGAATTTCTTGAAAAGA
    ATTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    546

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_1393 [new locus tag: NWMN_RS07860 ]
  • symbol: NWMN_1393
  • description: hypothetical protein
  • length: 181
  • theoretical pI: 10.6184
  • theoretical MW: 20024.3
  • GRAVY: 1.10552

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    Metabolism Transport and binding proteins Unknown substrate ECF transporter S component, folate family (TIGR04518; HMM-score: 34.4)
    and 1 more
    membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family (TIGR03074; EC 1.1.-.-; HMM-score: 9.2)
  • TheSEED  :
    • Riboflavin ECF transporter, substrate-specific component RibU
    Membrane Transport Membrane Transport - no subcategory ECF class transporters  Substrate-specific component RibU of riboflavin ECF transporter
  • ⊞PFAM:
    Gx_transp (CL0315) ECF_trnsprt; ECF transporter, substrate-specific component (PF12822; HMM-score: 132.9)
    and 9 more
    ECF-ribofla_trS; ECF-type riboflavin transporter, S component (PF07155; HMM-score: 45.4)
    Thia_YuaJ; Thiamine transporter protein (Thia_YuaJ) (PF09515; HMM-score: 21.9)
    5TM-5TMR_LYT; 5TMR of 5TMR-LYT (PF07694; HMM-score: 20.9)
    CbiM; Cobalt uptake substrate-specific transmembrane region (PF01891; HMM-score: 18.1)
    Hpre_diP_synt_I; Heptaprenyl diphosphate synthase component I (PF07456; HMM-score: 16)
    no clan defined DUF4118; Domain of unknown function (DUF4118) (PF13493; HMM-score: 16)
    EBP; EXPERA (EXPanded EBP superfamily) (PF05241; HMM-score: 14.2)
    Tmemb_14; Transmembrane proteins 14C (PF03647; HMM-score: 13.7)
    Peroxisome (CL0484) Pex24p; Integral peroxisomal membrane peroxin (PF06398; HMM-score: 6.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 4
  • ⊞DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0001
    • Cytoplasmic Membrane Score: 0.999
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0008
  • ⊞LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: 0
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.05587
    • TAT(Tat/SPI): 0.000847
    • LIPO(Sec/SPII): 0.010773
  • predicted transmembrane helices (TMHMM): 5

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MQQNKRLITISMLSAIAFVLTFIKFPIPFLPPYLTLDFSDVPSLLATFTFGPVAGIVVALVKNLLNYLFSMGDPVGPFANFLAGASFLLTAYAIYKNKRSTKSLITGLIIATIVMTIVLSILNYFVLLPLYGMIFNLADIANNLKVIIVSGIIPFNIIKGIVISIVFILLYRRLANFLKRI

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • ⊞regulator: FMN-box (transcription termination) regulon

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=NWMN_1393&oldid=65432"