From AureoWiki
Revision as of 12:38, 10 March 2016 by AureoSysAdmin (talk | contribs) (Text replacement - "gene Genbank" to "gene RefSeq")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS13650 [old locus tag: SACOL2609 ]
  • pan locus tag?: SAUPAN006274000
  • symbol: SACOL_RS13650
  • pan gene symbol?: —
  • synonym:
  • product: VOC family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS13650 [old locus tag: SACOL2609 ]
  • symbol: SACOL_RS13650
  • product: VOC family protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2667305..2667754
  • length: 450
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (2667305..2667754) NCBI
  • BioCyc: SACOL_RS13650 BioCyc
  • MicrobesOnline: see SACOL2609

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGACAGCATTATTCCCTTATATCGCTTTTGAAAATTCAAAAGAAGCCCTTGCATATTAC
    GAAGAAGTATTTGGTGCAACTGACGTTAAACGTTTAGAAGTTGGCGAAGAACAAGCGTCA
    CATTTTGGTATGACTAAGGAAGAAGCGCAAGAAGCAACTATGCATGCTGAATTTGAAGTG
    CTTGGCGTAAAAGTGTTATGTTCTGATTCTTTTGGTCGCGCTGACAAAATTAATAATGGC
    ATATCATTATTAATTGATTATGATGTTAACAATAAGGAAGATGCTGATAAAGTTGAAGCA
    TTCTATGAGCAAATTAAAGATCATTCTTCAATTGAAATAGAATTACCGTTTGCTGACCAA
    TTCTGGGGTGGCAAAATGGGCGTCTTTACCGATAAATACGGTGTTCGTTGGATGTTACAT
    GGTCAAGACTATACTGCAATCCAACAATAA
    60
    120
    180
    240
    300
    360
    420
    450

⊟Protein[edit | edit source]

Protein Data Bank: 3L20

⊟General[edit | edit source]

  • locus tag: SACOL_RS13650 [old locus tag: SACOL2609 ]
  • symbol: SACOL_RS13650
  • description: VOC family protein
  • length: 149
  • theoretical pI: 4.22426
  • theoretical MW: 16938.8
  • GRAVY: -0.377181

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SACOL2609
  • ⊞PFAM:
    Glyoxalase (CL0104) 3-dmu-9_3-mt; 3-demethylubiquinone-9 3-methyltransferase (PF06983; HMM-score: 36.4)
    Glyoxalase; Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily (PF00903; HMM-score: 29.5)
    and 1 more
    At5g48480-like_N; Glyoxalase At5g48480-like, N-terminal domain (PF22656; HMM-score: 12.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9975
    • Cytoplasmic Membrane Score: 0.0001
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0024
  • LocateP:
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.006207
    • TAT(Tat/SPI): 0.000287
    • LIPO(Sec/SPII): 0.0006
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTALFPYIAFENSKEALAYYEEVFGATDVKRLEVGEEQASHFGMTKEEAQEATMHAEFEVLGVKVLCSDSFGRADKINNGISLLIDYDVNNKEDADKVEAFYEQIKDHSSIEIELPFADQFWGGKMGVFTDKYGVRWMLHGQDYTAIQQ

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL2609
  • protein localization: see SACOL2609
  • quantitative data / protein copy number per cell: see SACOL2609
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SACOL_RS13650&oldid=55430"