From AureoWiki
Revision as of 02:36, 14 January 2025 by Adberti (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search

⊟Summary[edit | edit source]

  • pan ID?: SAUPAN002244000
  • symbol?: mfd
  • synonym:
  • ⊟description?: transcription-repair coupling factor

      descriptions from strain specific annotations:

    • transcription-repair coupling factor
    • putative transcription-repair coupling factor
  • strand?: +
  • coordinates?: 2749534..2753040
  • synteny block?: BlockID0015430
  • occurrence?: in 100% of 34 strains

mfd : transcription-repair coupling factor [1]

Staphylococci need to be able to recover from coding strand errors that stall transcription machinery. Transcription-repair coupling factor binds stalled RNA polymerase, recruits the UvrA nuclease to the transcription-halting lesion and displaces the stalled polymerase to allow base-excision repair to proceed.

⊟Orthologs[edit | edit source]

    COL:
    SACOL0547 (mfd)
    N315:
    SA0461 (mfd)
    NCTC8325:
    SAOUHSC_00477
    Newman:
    NWMN_0466 (mfd)
    USA300_FPR3757:
    SAUSA300_0481 (mfd)
    04-02981:
    SA2981_0478
    08BA02176:
    C248_0559
    11819-97:
    MS7_0480 (mfd)
    6850:
    RSAU_000442 (mfd)
    71193:
    ST398NM01_0569
    ECT-R 2:
    ECTR2_443 (mfd)
    ED133:
    SAOV_0525
    ED98:
    SAAV_0450 (mfd)
    HO 5096 0412:
    SAEMRSA15_04290
    JH1:
    SaurJH1_0538
    JH9:
    SaurJH9_0525
    JKD6008:
    SAA6008_00508 (mfd)
    JKD6159:
    SAA6159_00454 (mfd)
    JSNZ:
    JSNZ_000443 (mfd)
    LGA251:
    SARLGA251_04370
    M013:
    M013TW_0475
    MRSA252:
    SAR0504
    MSHR1132:
    SAMSHR1132_04470
    MSSA476:
    SAS0460
    Mu3:
    SAHV_0500 (mfd)
    Mu50:
    SAV0503 (mfd)
    MW2:
    MW0458 (mfd)
    RF122:
    SAB0452
    ST398:
    SAPIG0569 (mfd)
    T0131:
    SAT0131_00549
    TCH60:
    HMPREF0772_10016 (trcF)
    TW20:
    SATW20_05710
    USA300_TCH1516:
    USA300HOU_0497 (mfd)
    VC40:
    SAVC_02100

⊟Genome Viewer[edit | edit source]

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments[edit | edit source]

  • ⊞alignment of orthologues:

  1. ↑ C P Selby, A Sancar
    Molecular mechanism of transcription-repair coupling.
    Science: 1993, 260(5104);53-8
    [PubMed:8465200] [WorldCat.org] [DOI] (P p)    Rebecca Yee, Jie Feng, Jiou Wang, Jiazhen Chen, Ying Zhang
    Identification of Genes Regulating Cell Death in Staphylococcus aureus.
    Front Microbiol: 2019, 10;2199
    [PubMed:31632363] [WorldCat.org] [DOI] (P e)
Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SAUPAN002244000&oldid=105087"