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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA_RS13675 [old locus tag: SA2389 ]
- pan locus tag?: SAUPAN006291000
- symbol: SA_RS13675
- pan gene symbol?: truncated-SA
- synonym:
- product: serine protease
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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481ATGACAAAAATTTTTAAAATATCATTTTTGATTTTGTTAGTAGTAATTGTTTCTAGTTAT
TATGGTGAAAGTTTTGTCTTAGCTGATAATAATCCTATCGTCAATTCAGAAAATGGTAGT
GATAATAATTTTGAATCAGGAACAATTGAACGTAATCAAAATGAGCTTTATGAAGTAGGT
GATTATAGTACGCCCTTAACTGAGCGAGTTTTCGGTAAAGATCAAAGAACGGTTGTTAAT
AATATTTTACAAAGACCTTATAAGCAGACTGTATTATTAAATATGACGTTTTCAAATAAC
CGTGTATATAAAGGCACCGGTACTATGATTGGTAAGGACATTGTATTGACAGCGGCTCAT
AATGTCTATTCTAAAGACGATAAGGGTTGGGCTAAAAAGATTGATGTCTATGCTGGAGTA
AATGGGCAAACATATACAATAGGAAAGGCCTTTTCGCATAAGTTTTTTGTATCTAAAACT
TGGATTAATAATTTAACCATAGTATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA_RS13675 [old locus tag: SA2389 ]
- symbol: SA_RS13675
- description: serine protease
- length: 168
- theoretical pI: 9.43222
- theoretical MW: 18967.4
- GRAVY: -0.227381
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: see SA2389
- PFAM: Peptidase_PA (CL0124) Trypsin; Trypsin (PF00089; HMM-score: 23.6)and 1 moreTrypsin_2; Trypsin-like peptidase domain (PF13365; HMM-score: 14.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Extracellular
- Cytoplasmic Score: 0.01
- Cytoplasmic Membrane Score: 0.09
- Cellwall Score: 0.18
- Extracellular Score: 9.72
- Internal Helix: 1
- LocateP:
- SignalP: Signal peptide SP(Sec/SPI) length 28 aa
- SP(Sec/SPI): 0.931214
- TAT(Tat/SPI): 0.001001
- LIPO(Sec/SPII): 0.023714
- Cleavage Site: CS pos: 28-29. VLA-DN. Pr: 0.8612
- predicted transmembrane helices (TMHMM): 1
⊟Protein sequence[edit | edit source]
- MTKIFKISFLILLVVIVSSYYGESFVLADNNPIVNSENGSDNNFESGTIERNQNELYEVGDYSTPLTERVFGKDQRTVVNNILQRPYKQTVLLNMTFSNNRVYKGTGTMIGKDIVLTAAHNVYSKDDKGWAKKIDVYAGVNGQTYTIGKAFSHKFFVSKTWINNLTIV
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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