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Revision as of 21:25, 10 March 2016 by AureoSysAdmin (talk | contribs) (Text replacement - "gene Genbank" to "gene RefSeq")
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NCBI date : _

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS12575 [old locus tag: SA2193 ]
  • pan locus tag?: SAUPAN005937000
  • symbol: SA_RS12575
  • pan gene symbol?: —
  • synonym:
  • product: glutathione S-transferase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS12575 [old locus tag: SA2193 ]
  • symbol: SA_RS12575
  • product: glutathione S-transferase
  • replicon: chromosome
  • strand: -
  • coordinates: 2463506..2463973
  • length: 468
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq: WP_000153347 NCBI

⊟Phenotype[edit | edit source]

  • Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGACGATTAAAGTTGAAGATAATAAAATTATTTTTTCAAGAACGATAGAAGCACCGATT
    GAAAAGGTGTTTGATGCCTATACGACAAAAGAATTATTTGAAAAATGGTTTCATCCAAAA
    GGGGCTAGCACAAAAGTATTTCGCTTTAATGCTGTTTCAGGCGGTGATGCATTTTATGCG
    ATTAAAACACCTACAATGACCAGCTATACATTAGCAGAATATAAAACGGTTAAGCGTCCA
    TATTTAATTGAATATATTGACTCATTTGCGACACCTCAAGGTGCAAAAGATACAAAAATG
    CCAAGCATGAAAATTACTTTGTCATTTTCCAAGAGCAATACAACGAAAACGACAGTGACA
    TCAACATCGGTATTTCCAACAAAAGAAGCCGCTCAACAAGTCATAAACATGGGTGTTGAA
    CAAGGTATGAATCAAACTTTAGATCAACTTGATGCTTTATTGAAATAA
    60
    120
    180
    240
    300
    360
    420
    468

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS12575 [old locus tag: SA2193 ]
  • symbol: SA_RS12575
  • description: glutathione S-transferase
  • length: 155
  • theoretical pI: 9.7192
  • theoretical MW: 17418.9
  • GRAVY: -0.316774

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SA2193
  • PFAM:
    Bet_V_1_like (CL0209) AHSA1; Activator of Hsp90 ATPase homolog 1-like protein (PF08327; HMM-score: 80.2)
    and 1 more
    Polyketide_cyc2; Polyketide cyclase / dehydrase and lipid transport (PF10604; HMM-score: 14.7)

⊟Structure, modifications & interactions[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • interaction partners:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.009522
    • TAT(Tat/SPI): 0.002786
    • LIPO(Sec/SPII): 0.000752
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI: 446075492 NCBI
  • UniProt: see SA2193
  • protein Genbank : _
  • RefSeq: WP_000153347 NCBI

⊟Protein sequence[edit | edit source]

  • MTIKVEDNKIIFSRTIEAPIEKVFDAYTTKELFEKWFHPKGASTKVFRFNAVSGGDAFYAIKTPTMTSYTLAEYKTVKRPYLIEYIDSFATPQGAKDTKMPSMKITLSFSKSNTTKTTVTSTSVFPTKEAAQQVINMGVEQGMNQTLDQLDALLK

⊟Peptides[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • sigma factors : _
  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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