From AureoWiki
Revision as of 19:17, 10 March 2016 by AureoSysAdmin (talk | contribs) (Text replacement - "gene Genbank" to "gene RefSeq")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS09950 [old locus tag: SA1733 ]
  • pan locus tag?: SAUPAN004952000
  • symbol: SA_RS09950
  • pan gene symbol?: —
  • synonym:
  • product: pectate lyase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS09950 [old locus tag: SA1733 ]
  • symbol: SA_RS09950
  • product: pectate lyase
  • replicon: chromosome
  • strand: -
  • coordinates: 1985277..1986374
  • length: 1098
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (1985277..1986374) NCBI
  • BioCyc: G1G21-2006 BioCyc
  • MicrobesOnline: see SA1733

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    ATGTATATCAATATGAAAGATTATGGGTTAACAGGCATAAACAAAACTAAAGATACTCGA
    GCAATACAACGTGCGTTAAATCGTGGAAGATGTAAACCAACGACAGTTTATATACCGAAA
    GGGACGTATGATATTTGCAAACCATTAACGATATATGGCAATACAACACTTTTGTTAGAT
    AATGAAACTATTTTACGCCGATGTCATTCTGGTCCTTTATTAAAAAATGGTCATCGCTTT
    GGTTTTTATCGTGGTTATAATGGACACAGTCATATTCATATTAAAGGCGGCAAGTTTGAT
    ATGAATGGTGTATCGTATCCTTATAACAATACAGCTATGTGCATTGGGCATGCTGAAGAT
    ATTCAATTAATAGGTGTGACCATTAAGAATGTAGTGAGTGGTCATGCAATTGATGCTTGT
    GGGATTAACGGACTCTATATTAAAAGCTGTTCATTTGAAGGATTCATAGACTATAGTGGC
    GAACGCTTTTATTCTGAAGCAATACAATTAGACATTCAAGTACCTGGTGCTTTTCCAAAA
    TTCGGAACGACAGATGGTACGATAACGAAAAATGTCGTTATCGAAGATTGTTATTTTGGA
    CCTTCAGAATTGCCCGAAATGGGAAGTTGGAATCGTGCTATTGGCTCACATGCAAGTAGA
    CATAATCGTTACTATGAGAATATTCATATTAGAAATAATATATTTGAAGATATACAAGGT
    TATGCATTAACTCCCTTGAAGTATAAAGATGCTTTCATTATTAATAATAAGTTTATTAAC
    TGTGAGGGTGGTATTAGATATTTAGGAGTTAGAGATGGTAAAAATGCAGCAGATGTGATG
    ACAGGAAAAGACTTAGGTTCCCAAGCAGGCATAAATATGAATATAATTGGAAATGAATTT
    AAAGGATCAATGTCTAAAGATGCGATACATGTACGTAATTATAATAATGTTAAACATAAA
    GATGTATTAATCGTTGGGAATACATTCAATAATTCGACTCAATCAATTCATTTAGAAGAT
    ATTGATACAGTGTTTTTAAGTCCTGTTGAAGCGGGTATTCAAGTTACTACAATCAATATA
    GATGAAATAAAAAAGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1098

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS09950 [old locus tag: SA1733 ]
  • symbol: SA_RS09950
  • description: pectate lyase
  • length: 365
  • theoretical pI: 8.36388
  • theoretical MW: 40700
  • GRAVY: -0.335342

⊟Function[edit | edit source]

  • TIGRFAM:
    parallel beta-helix repeat (TIGR03804; HMM-score: 5.1)
  • TheSEED: see SA1733
  • PFAM:
    Pec_lyase-like (CL0268) Pectate_lyase_3; Pectate lyase superfamily protein (PF12708; HMM-score: 46.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.117818
    • TAT(Tat/SPI): 0.001116
    • LIPO(Sec/SPII): 0.011057
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MYINMKDYGLTGINKTKDTRAIQRALNRGRCKPTTVYIPKGTYDICKPLTIYGNTTLLLDNETILRRCHSGPLLKNGHRFGFYRGYNGHSHIHIKGGKFDMNGVSYPYNNTAMCIGHAEDIQLIGVTIKNVVSGHAIDACGINGLYIKSCSFEGFIDYSGERFYSEAIQLDIQVPGAFPKFGTTDGTITKNVVIEDCYFGPSELPEMGSWNRAIGSHASRHNRYYENIHIRNNIFEDIQGYALTPLKYKDAFIINNKFINCEGGIRYLGVRDGKNAADVMTGKDLGSQAGINMNIIGNEFKGSMSKDAIHVRNYNNVKHKDVLIVGNTFNNSTQSIHLEDIDTVFLSPVEAGIQVTTINIDEIKK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SA_RS09950&oldid=67778"