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Revision as of 10:31, 10 March 2016 by AureoSysAdmin (talk | contribs) (Text replacement - "gene Genbank" to "gene RefSeq")
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NCBI date : _

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS08975 [old locus tag: SA1593 ]
  • pan locus tag?: SAUPAN004467000
  • symbol: SA_RS08975
  • pan gene symbol?: —
  • synonym:
  • product: autolysin

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS08975 [old locus tag: SA1593 ]
  • symbol: SA_RS08975
  • product: autolysin
  • replicon: chromosome
  • strand: -
  • coordinates: 1832517..1833371
  • length: 855
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq: WP_001032833 NCBI

⊟Phenotype[edit | edit source]

  • Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGAATAAACACAAGAAAGGTTCTATTTTTGGAATAATAGGACTTGTTGTCATATTTGCT
    GTTGTCTCATTTTTATTTTTCTCAATGATATCCGATCAGATATTTTTCAAACATGTTAAA
    TCCGACATTAAGATTGAAAAGTTAAATGTTACATTAAACGATGCAGCAAAGAAACAAATA
    AATAATTATACGAGTCAACAGGTATCAAATAAAAAGAATGATGCATGGAGAGATGCATCT
    GCAACTGAAATTAAAAGTGCAATGGATAGCGGTACTTTTATCGATAATGAAAAGCAAAAA
    TATCAATTTTTAGATTTATCAAAGTATCAAGGGATTGATAAAAATAGAATTAAACGTATG
    TTAGTAGATAGACCAACGTTATTGAAACATACGGATGATTTCTTAAAAGCTGCTAAAGAT
    AAGCACGTTAACGAAGTTTATTTAATTTCACATGCATTATTAGAAACTGGCGCAGTTAAA
    AGTGAATTAGCTAATGGAGTCGAAATTGATGGCAAAAAATACTACAATTTCTATGGAGTA
    GGAGCCCTTGATAAAGACCCAATTAAAACAGGTGCAGAATATGCTAAAAAGCATGGTTGG
    GATACACCTGAAAAAGCTATTTCAGGCGGTGCTGATTTCATTCATAAGCACTTCTTATCA
    AGCACAGATCAAAATACATTGTATAGTATGAGATGGAATCCAAAAAATCCAGGAGAACAT
    CAATATGCTACTGATATTAAGTGGGCAGAAAGTAATGCAACAATTATCGCTGACTTTTAT
    AAGAATATGAAGACTGAAGGAAAATACTTCAAATACTTTGTGTATAAAGATGACAGTAAA
    CATTTGAATAAGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    855

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS08975 [old locus tag: SA1593 ]
  • symbol: SA_RS08975
  • description: autolysin
  • length: 284
  • theoretical pI: 9.78873
  • theoretical MW: 32505.8
  • GRAVY: -0.595423

⊟Function[edit | edit source]

  • TIGRFAM:
    flagellar rod assembly protein/muramidase FlgJ (TIGR02541; HMM-score: 14.8)
    Genetic information processing Protein synthesis Translation factors selenocysteine-specific translation elongation factor (TIGR00475; HMM-score: 13.5)
  • TheSEED: see SA1593
  • PFAM:
    Lysozyme (CL0037) Glucosaminidase; Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase (PF01832; HMM-score: 48.4)
    and 2 more
    no clan defined Pox_A3L; Poxvirus A3L Protein (PF05288; HMM-score: 14.1)
    Peptidase_MA (CL0126) Peptidase_M56; BlaR1 peptidase M56 (PF05569; HMM-score: 13.1)

⊟Structure, modifications & interactions[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • interaction partners:

⊟Localization[edit | edit source]

  • PSORTb: Extracellular
    • Cytoplasmic Score: 0.01
    • Cytoplasmic Membrane Score: 0.09
    • Cellwall Score: 0.18
    • Extracellular Score: 9.72
    • Internal Helix: 1
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.21463
    • TAT(Tat/SPI): 0.00093
    • LIPO(Sec/SPII): 0.01466
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

  • GI: 446955577 NCBI
  • UniProt: see SA1593
  • protein Genbank : _
  • RefSeq: WP_001032833 NCBI

⊟Protein sequence[edit | edit source]

  • MNKHKKGSIFGIIGLVVIFAVVSFLFFSMISDQIFFKHVKSDIKIEKLNVTLNDAAKKQINNYTSQQVSNKKNDAWRDASATEIKSAMDSGTFIDNEKQKYQFLDLSKYQGIDKNRIKRMLVDRPTLLKHTDDFLKAAKDKHVNEVYLISHALLETGAVKSELANGVEIDGKKYYNFYGVGALDKDPIKTGAEYAKKHGWDTPEKAISGGADFIHKHFLSSTDQNTLYSMRWNPKNPGEHQYATDIKWAESNATIIADFYKNMKTEGKYFKYFVYKDDSKHLNK

⊟Peptides[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • sigma factors : _
  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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