PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI date : _

⊟Summary

• organism: Staphylococcus aureus N315
• locus tag: SA_RS03540 [old locus tag: SA0617 ]
• pan locus tag^?: SAUPAN002541000
• symbol: SA_RS03540
• pan gene symbol^?: vraG
• synonym:
• product: bacitracin ABC transporter permease

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SA_RS03540 [old locus tag: SA0617 ]
• symbol: SA_RS03540
• product: bacitracin ABC transporter permease
• replicon: chromosome
• strand: +
• coordinates: 710847..712736
• length: 1890
• essential: no DEG other strains

⊟Accession numbers

• Gene ID:
• RefSeq: WP_000143615 NCBI

⊟Phenotype

• Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
  121
  181
  241
  301
  361
  421
  481
  541
  601
  661
  721
  781
  841
  901
  961
  1021
  1081
  1141
  1201
  1261
  1321
  1381
  1441
  1501
  1561
  1621
  1681
  1741
  1801
  1861
  
  ATGACCTTTAACGAGATAATATTTAAAAATTTCCGTCAAAATTTATCACATTATGCCATC
  TATCTTTTTTCATTAATTACGAGTGTAGTATTGTATTTTAGCTTTGTAGCATTAAAATAC
  GCGCATAAACTAAACATGACAGAGTCATATCCAATTATTAAGGAAGGCTCACAAGTCGGA
  AGCTACTTTCTATTTTTCATCATAATTGCATTTTTGTTATATGCCAATGTGTTATTTATT
  AAACGACGAAGTTATGAGCTTGCATTATATCAAACATTAGGTTTATCTAAATTCAACATT
  ATTTATATACTAATGCTCGAACAATTACTAATATTTATAATTACGGCAATATTAGGTATT
  ATTATTGGTATTTTTGGTTCAAAACTGTTATTAATGATTGTCTTTACATTATTAGGAATT
  AAAGAAAAGGTTCCAATTATTTTTAGTTTGAGGGCGGTATTTGAAACATTAATGTTAATC
  GGTGTCGCTTATTTTTTAACCTCTGCTCAAAATTTTATATTAGTGTTCAAACAATCTATT
  TCACAGATGTCAAAGAATAACCAGGTTAAAGAAACAAATCATAATAAAATTACATTTGAA
  GAGGTTGTTTTAGGCATCTTAGGTATAGTATTGATTACCACAGGATACTATCTATCTTTG
  AACATTGTTCAATATTATGATTCTATCGGTATACTTATGTTTATTTTATTGTCAACTGTG
  ATTGGGGCATACTTATTTTTTAAAAGCTCTGTTTCTCTAGTTTTTAAAATGGTGAAGAAG
  TTTAGAAAAGGTGTTATAAGTGTAAATGATGTCATGTTCTCATCATCTATTATGTATCGT
  ATTAAGAAAAATGCTTTTTCACTTACGGTCATGGCAATCATTTCAGCGATTACTGTTTCA
  GTTCTTTGCTTTGCTGCTATAAGTAGAGCGTCCTTATCAAGTGAAATAAAATATACTGCA
  CCACACGACGTTACAATTAAAGACCAACAAAAAGCTAATCAATTAGCAAGTGAATTAAAC
  AATCAAAAAATTCCTCATTTTTATAATTATAAAGAAGTAATTCATACGAAATTGTATAAA
  GATAATTTATTTGATGTAAAAGCGAAAGAACCATACAATGTAACAATTACTAGTGATAAA
  TATATCCCTAATACTGATTTGAAACGTGGACAAGCTGATTTGTTTGTAGCGGAAGGTTCT
  ATCAAAGATTTAGTGAAACATAAGAAGCATGGTAAGGCAATTATAGGAACGAAAAAACAT
  CATGTTAATATTAAGTTACGGAAAGATATTAATAAAATCTATTTTATGACAGATGTTGAT
  TTAGGTGGACCAACGTTTGTCTTAAATGACAAAGACTATCAAGAAATAAGAAAGTATACA
  AAAGCAAAGCATATCGTCTCTCAATTTGGATTCGATTTGAAACATAAAAAAGATGCTTTA
  GCATTAGAAAAAGTGAAAAATAAAGTTGATAAATCTATTAAAACAAGAAGTGAAGCGATA
  AGCTCAATATCAAGTTTAACCGGAATATTATTATTTGTAACATCATTTTTAGGTATTACA
  TTCTTGATTGCTGTATGTTGCATTATATACATTAAGCAAATAGATGAAACCGAAGATGAG
  TTAGAGAATTATAGTATATTGAGAAAGCTTGGATTTACACAAAAAGATATGGCAAGGGGA
  CTAAAGTTTAAAATTATGTTTAATTTTGGGTTACCTTTAGTTATTGCACTATCACATGCA
  TATTTTACATCATTAGCATATATGAAATTAATGGGTACAACGAATCAAATACCGGTTTTC
  ATAGTAATGGGATTATACATTTGTATGTATGCTGTTTTTGCAGTGACGGCTTATAATCAT
  TCCAAGCGAACAATTAGACATTCCATATAA
  60
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  300
  360
  420
  480
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  720
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  1140
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  1440
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  1560
  1620
  1680
  1740
  1800
  1860
  1890
  

⊟Protein

⊟General

• locus tag: SA_RS03540 [old locus tag: SA0617 ]
• symbol: SA_RS03540
• description: bacitracin ABC transporter permease
• length: 629
• theoretical pI: 10.1152
• theoretical MW: 71770.7
• GRAVY: 0.366455

⊟Function

• TIGRFAM:
  acidobacterial duplicated orphan permease (TIGR03434; HMM-score: 13.8)
• TheSEED: see SA0617
• PFAM:
  BPD_transp_1 (CL0404) FtsX; FtsX-like permease family (PF02687; HMM-score: 22.9)
  and 1 more
  no clan defined TMEM251; Transmembrane protein 251 (PF15190; HMM-score: 8.3)

⊟Structure, modifications & interactions

• domains:
• modifications:
• cofactors:
• effectors:
• interaction partners:

⊟Localization

• PSORTb: Cytoplasmic Membrane
  • Cytoplasmic Score: 0
  • Cytoplasmic Membrane Score: 10
  • Cellwall Score: 0
  • Extracellular Score: 0
  • Internal Helices: 10
• LocateP:
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.007787
  • TAT(Tat/SPI): 0.000247
  • LIPO(Sec/SPII): 0.002804
• predicted transmembrane helices (TMHMM): 10

⊟Accession numbers

• GI: 446065760 NCBI
• UniProt: see SA0617
• protein Genbank : _
• RefSeq: WP_000143615 NCBI

⊟Protein sequence

• MTFNEIIFKNFRQNLSHYAIYLFSLITSVVLYFSFVALKYAHKLNMTESYPIIKEGSQVGSYFLFFIIIAFLLYANVLFIKRRSYELALYQTLGLSKFNIIYILMLEQLLIFIITAILGIIIGIFGSKLLLMIVFTLLGIKEKVPIIFSLRAVFETLMLIGVAYFLTSAQNFILVFKQSISQMSKNNQVKETNHNKITFEEVVLGILGIVLITTGYYLSLNIVQYYDSIGILMFILLSTVIGAYLFFKSSVSLVFKMVKKFRKGVISVNDVMFSSSIMYRIKKNAFSLTVMAIISAITVSVLCFAAISRASLSSEIKYTAPHDVTIKDQQKANQLASELNNQKIPHFYNYKEVIHTKLYKDNLFDVKAKEPYNVTITSDKYIPNTDLKRGQADLFVAEGSIKDLVKHKKHGKAIIGTKKHHVNIKLRKDINKIYFMTDVDLGGPTFVLNDKDYQEIRKYTKAKHIVSQFGFDLKHKKDALALEKVKNKVDKSIKTRSEAISSISSLTGILLFVTSFLGITFLIAVCCIIYIKQIDETEDELENYSILRKLGFTQKDMARGLKFKIMFNFGLPLVIALSHAYFTSLAYMKLMGTTNQIPVFIVMGLYICMYAVFAVTAYNHSKRTIRHSI

⊟Peptides

• experimentally validated: data available for COL, NCTC8325

⊟Expression & Regulation

⊟Operon

⊟Regulation

• sigma factors : _
• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications