From AureoWiki
Revision as of 12:05, 11 March 2016 by AureoSysAdmin (talk | contribs) (Text replacement - "gene Genbank" to "gene RefSeq")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search

NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS02310 [old locus tag: SA0404 ]
  • pan locus tag?: SAUPAN002145000
  • symbol: SA_RS02310
  • pan gene symbol?: lpl8
  • synonym:
  • product: tandem-type lipoprotein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS02310 [old locus tag: SA0404 ]
  • symbol: SA_RS02310
  • product: tandem-type lipoprotein
  • replicon: chromosome
  • strand: +
  • coordinates: 463725..464507
  • length: 783
  • essential: no DEG other strains

Accession numbers[edit | edit source]

  • Location: NC_002745 (463725..464507) NCBI
  • BioCyc: G1G21-445 BioCyc
  • MicrobesOnline: see SA0404

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGAAGTCTATAAAAAGGATTGGATTGTGCATAAGTCTGTTGATTTTAATCATTTTTGCA
    ACATCTTGTGGTAGTAATAAGATTACTGGAGACTCAAAAGAAGAACAAATCAAAAAGAGT
    TTTGCGAAATCTTTAGACAAGTATCCTACTGAAAATCTAGAAGAGTTTTATGATAAAGAA
    GGATATAGAGATGGAGAATTTGAAAAAGATGATAAAGGGACTTGGCTAATTAGATCTGAA
    ATGAAAATCCAATTAAAAGGAGAAAATCTGGAATCTAGGGGAGCAGTTATAGAAATTAAC
    AGAAATACTAGAACGGCTAAAGGGAATTATATTGTTAGAGAAGTTGTTGAAGATAGCGAT
    GGAATGACACACAATCATACAAAAAGGTATCCTGTGAAAATGGAAAATAATAAAATGATT
    CCATTAAAATCAATTGATGATGAAAAAGTAAAAAAAGAAATTGAAGAATTTAAATTCTTT
    GTACAATACGGGAATTTCAAAGAATTGGAAAACTATAAAGAGGACGAAGTGTCATATAAC
    CCAGAAGTACCAATATACTCTGCACAATATCAATTGAAAAACAGTGATTATAATGTAGAG
    CAATTACGTAAGCGATATAATATCCCGACGCAAAAAGCGCCCAAATTATTATTGAAAGGC
    TCAGGTAATTTAAAAGGTTCATCAGTCGGATATAAAAATATTGAATTTACCTTTGTTGAA
    AATAAGGAAGAAAATATTTACTTCACAGATAGTGTCTACTTTAATCCAAGCGAGGATAAA
    TAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    783

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SA_RS02310 [old locus tag: SA0404 ]
  • symbol: SA_RS02310
  • description: tandem-type lipoprotein
  • length: 260
  • theoretical pI: 6.57845
  • theoretical MW: 30311.1
  • GRAVY: -0.856154

Function[edit | edit source]

  • TIGRFAM:
    Staphylococcus tandem lipoproteins (TIGR01742; HMM-score: 347.8)
  • TheSEED: see SA0404
  • PFAM:
    LolA_LolB (CL0048) DUF576; Csa1 family (PF04507; HMM-score: 417.5)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 4.6
    • Cellwall Score: 2.48
    • Extracellular Score: 2.92
    • Internal Helix: 1
  • LocateP:
  • SignalP: Signal peptide LIPO(Sec/SPII) length 22 aa
    • SP(Sec/SPI): 0.00094
    • TAT(Tat/SPI): 0.000042
    • LIPO(Sec/SPII): 0.998875
    • Cleavage Site: CS pos: 22-23. ATS-CG. Pr: 0.9990
  • predicted transmembrane helices (TMHMM): 1

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MKSIKRIGLCISLLILIIFATSCGSNKITGDSKEEQIKKSFAKSLDKYPTENLEEFYDKEGYRDGEFEKDDKGTWLIRSEMKIQLKGENLESRGAVIEINRNTRTAKGNYIVREVVEDSDGMTHNHTKRYPVKMENNKMIPLKSIDDEKVKKEIEEFKFFVQYGNFKELENYKEDEVSYNPEVPIYSAQYQLKNSDYNVEQLRKRYNIPTQKAPKLLLKGSGNLKGSSVGYKNIEFTFVENKEENIYFTDSVYFNPSEDK

Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]