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COLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 23-MAY-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_pUSA030026 [new locus tag: SAUSA300_RS14865 ]
- pan locus tag?:
- symbol: SAUSA300_pUSA030026
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_pUSA030026 [new locus tag: SAUSA300_RS14865 ]
- symbol: SAUSA300_pUSA030026
- product: hypothetical protein
- replicon: pUSA03
- strand: +
- coordinates: 24786..26057
- length: 1272
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID: 3912729 NCBI
- RefSeq: YP_492712 NCBI
- BioCyc: see SAUSA300_RS14865
- MicrobesOnline: 1291505 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1261ATGGATTACACAAATCAAAAAAGAAAATACATAATATTTGGTATTGTTCTTGCTATAACA
CTTCTAATTGTTGGAATTGCTTACTATTTAATCAGTTTGAATAATGCTAAAGGACAAGTT
AAAGAATTTGAAAAATTAGTACAGCATAATGACTACAATAGTATTGCTAAAAAGTTATCT
AATAAAGAAGAAACTTTATCTGAAAATGATGCTAAAAACTTTGTGTTATTTGTTAAAAGT
AAAGAAAATCAAGAACAATACAATGAGCAAATACAAAAAATTAAAAGTAATATTGATAAA
AATAAAGACAATAATACCGTGTATGGCTCTATAACAGATCAATACGGAAATAACCTAATA
ACTATTAAGAAAAACGGAAAGACTTTCTTTTTTATAGATAAATTAGAATTCAAACCTAAA
CTTACCAGCGTTTATGTGAAAGAATTTAATAACACTGGAATTTACAAATATCAGCAAGAA
AATGCTAAAAAGGTAATAGCAGAAAGCAATCAAACAACAGAATTAGGCAAGTTCTTTATT
GGTAAATATAGTATTAAAACAGATAAAACAATTGAAGATTCAATTCACAATGGGACTTTG
ACAGGAAAAATAGATATAGATTTAAGCAATAGAGGAAACAATAATAAGATATATGCAGAT
GAAGATTTTAACCAAAGCTGGTTTAAGGTTAAGCTAAACAATGATAGTTTATTAGAAAAA
AATAGTTACAAACTTTTAATTGATGATAAAGATGTTGATTATAATTCCAAAAAGACATAT
GGAAAGTATTACAATCCAACTGAATTAAGTGTATATGCGATTGGAAAATTAGAGGGTAAA
GAGTTTAAAACTAACAGAATAAATATAAGACGTAATTATGATAATAAACCTCAAAATTTA
AAATTAAGTTTTAAGGAATCTCAAATAAGAGATTATGAGAGTAAAAGTAAAAAGGTTAAA
GAAAAAGCTAAAAGCTATATTAAAGAATATACGAAAGAGTTAAACAAAGCATATAAAAAG
AAAGATTATAAATATATATCTGACTACGTTAAAAATAACTCTCAATTAGAAAAACAACTA
AAAAAACAGGTTAAGTCTAAATCAAAAGTTAAATTTAAAGATGTTAAGATAAACAACGTT
AAACGTGATAAAAACAAAATATATATTGAGTTAAGTAAAACCAACAATGGTAATGTGTTT
CAAACGAAATATACCTTAGATTACGATAATGTATCAAATGAATTTCTAGTAGAAGATTCA
CATGATAATTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_pUSA030026 [new locus tag: SAUSA300_RS14865 ]
- symbol: SAUSA300_pUSA030026
- description: hypothetical protein
- length: 423
- theoretical pI: 9.99319
- theoretical MW: 49634.8
- GRAVY: -0.979905
⊟Function[edit | edit source]
- TIGRFAM: heavy metal sensor kinase (TIGR01386; EC 2.7.13.3; HMM-score: 8.8)
- TheSEED :
- Similar to Teicoplanin resistance associated membrane protein TcaA
- PFAM: no clan defined AI-2E_transport; AI-2E family transporter (PF01594; HMM-score: 15.2)IncA; IncA protein (PF04156; HMM-score: 15.1)and 2 moreHSCB_C; HSCB C-terminal oligomerisation domain (PF07743; HMM-score: 9.1)CENP-H; Centromere protein H (CENP-H) (PF05837; HMM-score: 6.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 9.87
- Cellwall Score: 0.12
- Extracellular Score: 0.01
- Internal Helix: 1
- LocateP: N-terminally anchored (No CS)
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: -0.5
- N-terminally Anchored Score: 5
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.187122
- TAT(Tat/SPI): 0.001246
- LIPO(Sec/SPII): 0.008182
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MDYTNQKRKYIIFGIVLAITLLIVGIAYYLISLNNAKGQVKEFEKLVQHNDYNSIAKKLSNKEETLSENDAKNFVLFVKSKENQEQYNEQIQKIKSNIDKNKDNNTVYGSITDQYGNNLITIKKNGKTFFFIDKLEFKPKLTSVYVKEFNNTGIYKYQQENAKKVIAESNQTTELGKFFIGKYSIKTDKTIEDSIHNGTLTGKIDIDLSNRGNNNKIYADEDFNQSWFKVKLNNDSLLEKNSYKLLIDDKDVDYNSKKTYGKYYNPTELSVYAIGKLEGKEFKTNRINIRRNYDNKPQNLKLSFKESQIRDYESKSKKVKEKAKSYIKEYTKELNKAYKKKDYKYISDYVKNNSQLEKQLKKQVKSKSKVKFKDVKINNVKRDKNKIYIELSKTNNGNVFQTKYTLDYDNVSNEFLVEDSHDN
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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