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Revision as of 19:01, 10 March 2016 by AureoSysAdmin (talk | contribs) (Text replacement - "gene Genbank" to "gene RefSeq")
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NCBI date : _

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS10095 [old locus tag: SAUSA300_1848 ]
  • pan locus tag?: SAUPAN004849000
  • symbol: SAUSA300_RS10095
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_RS10095 [old locus tag: SAUSA300_1848 ]
  • symbol: SAUSA300_RS10095
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2010393..2010935
  • length: 543
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq: WP_000251253 NCBI

⊟Phenotype[edit | edit source]

  • Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGGTCAGAGAATCCATACCTAAAGAAGGGGAAAACATTAAAATTCAGAGTTATAAACAT
    GATGGTAAGATTCATCGCGTTTGGTCTGAAACAACAATATTAAAGGGTACTGATCATGTT
    GTCATTGGTGGAAATGATCATACGTTAGTGACTGAAAGTGACGGAAGAACTTGGATAACA
    CGTGAACCGGCAATTGTTTACTTTCACTCAGAATATTGGTTTAATGTTATCTGCATGTTT
    AGAGAAGATGGAATTTATTACTATTGCAATTTGTCATCACCATTTGTTTGTGATGAAGAG
    GCATTAAAATATATAGACTATGATTTAGATATTAAAGTATATCCAAACGGAAAGTATCAT
    TTATTAGATGAAGATGAATATGAGCAACATATGAATCAAATGAATTATCCGCATGATATT
    GATATTATTTTAAGACGCAACGTGGACATTCTTCAACAATGGATAGAACAGAAGAAGGGC
    CCATTCGCGCCAGATTTTATCAAAGTTTGGAAAGAACGTTACAAAAAAATTAGACAGTAT
    TAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    543

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_RS10095 [old locus tag: SAUSA300_1848 ]
  • symbol: SAUSA300_RS10095
  • description: hypothetical protein
  • length: 180
  • theoretical pI: 5.83964
  • theoretical MW: 21703.4
  • GRAVY: -0.683333

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SAUSA300_1848
  • PFAM:
    no clan defined DUF402; Protein of unknown function (DUF402) (PF04167; HMM-score: 64.3)
    and 1 more
    DUF624; Protein of unknown function, DUF624 (PF04854; HMM-score: 12.1)

⊟Structure, modifications & interactions[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • interaction partners:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.010681
    • TAT(Tat/SPI): 0.000417
    • LIPO(Sec/SPII): 0.000965
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MVRESIPKEGENIKIQSYKHDGKIHRVWSETTILKGTDHVVIGGNDHTLVTESDGRTWITREPAIVYFHSEYWFNVICMFREDGIYYYCNLSSPFVCDEEALKYIDYDLDIKVYPNGKYHLLDEDEYEQHMNQMNYPHDIDIILRRNVDILQQWIEQKKGPFAPDFIKVWKERYKKIRQY

⊟Peptides[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • sigma factors : _
  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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