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m (Text replacement - "* <aureodatabase>protein Genbank</aureodatabase> " to "") |
m (Text replacement - "gene Genbank" to "gene RefSeq") |
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__TOC__ | |||
<protect> | <protect> | ||
<aureodatabase> | <aureodatabase>annotation</aureodatabase> | ||
=Summary= | =Summary= | ||
* <aureodatabase>organism</aureodatabase> | *<aureodatabase>organism</aureodatabase> | ||
* <aureodatabase>locus</aureodatabase> | *<aureodatabase>locus</aureodatabase> | ||
* <aureodatabase>pan locus</aureodatabase> | *<aureodatabase>pan locus</aureodatabase> | ||
* <aureodatabase>gene symbol</aureodatabase> | *<aureodatabase>gene symbol</aureodatabase> | ||
* <aureodatabase>pan gene symbol</aureodatabase> | *<aureodatabase>pan gene symbol</aureodatabase> | ||
* <aureodatabase>gene synonyms</aureodatabase> | *<aureodatabase>gene synonyms</aureodatabase> | ||
* <aureodatabase>product</aureodatabase> | *<aureodatabase>product</aureodatabase> | ||
</protect> | </protect> | ||
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==General== | ==General== | ||
* <aureodatabase>gene type</aureodatabase> | *<aureodatabase>gene type</aureodatabase> | ||
* <aureodatabase>locus</aureodatabase> | *<aureodatabase>locus</aureodatabase> | ||
* <aureodatabase>gene symbol</aureodatabase> | *<aureodatabase>gene symbol</aureodatabase> | ||
* <aureodatabase>product</aureodatabase> | *<aureodatabase>product</aureodatabase> | ||
* <aureodatabase>gene replicon</aureodatabase> | *<aureodatabase>gene replicon</aureodatabase> | ||
* <aureodatabase>strand</aureodatabase> | *<aureodatabase>strand</aureodatabase> | ||
* <aureodatabase>gene coordinates</aureodatabase> | *<aureodatabase>gene coordinates</aureodatabase> | ||
* <aureodatabase>gene length</aureodatabase> | *<aureodatabase>gene length</aureodatabase> | ||
* <aureodatabase>essential</aureodatabase> | *<aureodatabase>essential</aureodatabase> | ||
*<aureodatabase>gene comment</aureodatabase> | |||
</protect> | </protect> | ||
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==Accession numbers== | ==Accession numbers== | ||
* <aureodatabase>gene | *<aureodatabase>gene location</aureodatabase> | ||
* <aureodatabase>gene | *<aureodatabase>gene BioCyc</aureodatabase> | ||
*<aureodatabase>gene MicrobesOnline</aureodatabase> | |||
</protect> | </protect> | ||
<protect> | <protect> | ||
==Phenotype== | ==Phenotype== | ||
</protect> | </protect> | ||
Share your knowledge and add information here. [<span class="plainlinks">[//aureowiki.med.uni-greifswald.de/index.php?title={{PAGENAMEE}}&veaction=edit§ion=6 edit]</span>] | |||
<protect> | <protect> | ||
==DNA sequence== | ==DNA sequence== | ||
* <aureodatabase>gene sequence</aureodatabase> | *<aureodatabase>gene sequence</aureodatabase> | ||
</protect> | </protect> | ||
<protect> | <protect> | ||
<aureodatabase>RNA regulated operons</aureodatabase> | |||
</protect> | |||
<protect> | |||
=Protein= | =Protein= | ||
<aureodatabase>protein 3D view</aureodatabase> | <aureodatabase>protein 3D view</aureodatabase> | ||
==General== | ==General== | ||
* <aureodatabase>locus</aureodatabase> | *<aureodatabase>locus</aureodatabase> | ||
* <aureodatabase>protein symbol</aureodatabase> | *<aureodatabase>protein symbol</aureodatabase> | ||
* <aureodatabase>protein description</aureodatabase> | *<aureodatabase>protein description</aureodatabase> | ||
* <aureodatabase>protein length</aureodatabase> | *<aureodatabase>protein length</aureodatabase> | ||
* <aureodatabase>theoretical pI</aureodatabase> | *<aureodatabase>theoretical pI</aureodatabase> | ||
* <aureodatabase>theoretical MW</aureodatabase> | *<aureodatabase>theoretical MW</aureodatabase> | ||
* <aureodatabase>GRAVY</aureodatabase> | *<aureodatabase>GRAVY</aureodatabase> | ||
</protect> | </protect> | ||
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==Function== | ==Function== | ||
* <aureodatabase>protein reaction</aureodatabase> | *<aureodatabase>protein reaction</aureodatabase> | ||
* <aureodatabase>protein TIGRFAM</aureodatabase> | *<aureodatabase>protein TIGRFAM</aureodatabase> | ||
* <aureodatabase>protein TheSeed</aureodatabase> | *<aureodatabase>protein TheSeed</aureodatabase> | ||
* <aureodatabase>protein PFAM</aureodatabase> | *<aureodatabase>protein PFAM</aureodatabase> | ||
</protect> | </protect> | ||
<protect> | <protect> | ||
==Structure, modifications & | ==Structure, modifications & cofactors== | ||
* <aureodatabase>protein domains</aureodatabase> | *<aureodatabase>protein domains</aureodatabase> | ||
* <aureodatabase>protein modifications</aureodatabase> | *<aureodatabase>protein modifications</aureodatabase> | ||
* <aureodatabase>protein cofactors</aureodatabase> | *<aureodatabase>protein cofactors</aureodatabase> | ||
* <aureodatabase>protein effectors</aureodatabase> | *<aureodatabase>protein effectors</aureodatabase> | ||
* <aureodatabase>protein | *<aureodatabase>protein regulated operons</aureodatabase> | ||
</protect> | </protect> | ||
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==Localization== | ==Localization== | ||
* <aureodatabase>protein Psortb</aureodatabase> | *<aureodatabase>protein Psortb</aureodatabase> | ||
* <aureodatabase>protein LocateP</aureodatabase> | *<aureodatabase>protein LocateP</aureodatabase> | ||
* <aureodatabase>protein SignalP</aureodatabase> | *<aureodatabase>protein SignalP</aureodatabase> | ||
* <aureodatabase>protein TMHMM</aureodatabase> | *<aureodatabase>protein TMHMM</aureodatabase> | ||
</protect> | </protect> | ||
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==Accession numbers== | ==Accession numbers== | ||
* <aureodatabase>protein GI</aureodatabase> | *<aureodatabase>protein GI</aureodatabase> | ||
* <aureodatabase>protein | *<aureodatabase>protein RefSeq</aureodatabase> | ||
* <aureodatabase>protein | *<aureodatabase>protein UniProt</aureodatabase> | ||
</protect> | </protect> | ||
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==Protein sequence== | ==Protein sequence== | ||
* <aureodatabase>protein sequence</aureodatabase> | *<aureodatabase>protein sequence</aureodatabase> | ||
</protect> | </protect> | ||
<protect> | <protect> | ||
== | ==Experimental data== | ||
* <aureodatabase>protein validated peptides</aureodatabase> | *<aureodatabase>protein validated peptides</aureodatabase> | ||
*<aureodatabase>protein validated localization</aureodatabase> | |||
*<aureodatabase>protein validated quantitative data</aureodatabase> | |||
*<aureodatabase>protein partners</aureodatabase> | |||
</protect> | </protect> | ||
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==Operon== | ==Operon== | ||
* <aureodatabase>operons</aureodatabase> | *<aureodatabase>operons</aureodatabase> | ||
</protect> | </protect> | ||
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==Regulation== | ==Regulation== | ||
*<aureodatabase>regulators</aureodatabase> | |||
* <aureodatabase>regulators</aureodatabase> | |||
</protect> | </protect> | ||
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==Transcription pattern== | ==Transcription pattern== | ||
* <aureodatabase>expression browser</aureodatabase> | *<aureodatabase>expression browser</aureodatabase> | ||
</protect> | </protect> | ||
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==Protein synthesis (provided by Aureolib)== | ==Protein synthesis (provided by Aureolib)== | ||
* <aureodatabase>protein synthesis Aureolib</aureodatabase> | *<aureodatabase>protein synthesis Aureolib</aureodatabase> | ||
</protect> | </protect> | ||
<protect> | <protect> | ||
== | ==Protein stability== | ||
* <aureodatabase>protein half-life</aureodatabase> | *<aureodatabase>protein half-life</aureodatabase> | ||
</protect> | </protect> | ||
Latest revision as of 02:48, 11 March 2016
NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS08395 [old locus tag: SAUSA300_1540 ]
- pan locus tag?: SAUPAN004163000
- symbol: SAUSA300_RS08395
- pan gene symbol?: dnaK
- synonym:
- product: molecular chaperone DnaK
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_RS08395 [old locus tag: SAUSA300_1540 ]
- symbol: SAUSA300_RS08395
- product: molecular chaperone DnaK
- replicon: chromosome
- strand: -
- coordinates: 1689411..1691243
- length: 1833
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: NC_007793 (1689411..1691243) NCBI
- BioCyc: see SAUSA300_1540
- MicrobesOnline: see SAUSA300_1540
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1801ATGAGTAAAATTATTGGTATAGACTTAGGTACAACAAATTCATGTGTAACAGTATTAGAA
GGCGATGAGCCAAAAGTAATTCAAAACCCTGAAGGTTCACGTACAACACCATCTGTTGTA
GCTTTCAAAAATGGAGAAACTCAAGTTGGTGAAGTAGCAAAACGTCAAGCTATTACAAAC
CCAAACACTGTTCAATCTATTAAACGTCATATGGGTACTGATTATAAAGTAGATATTGAA
GGTAAATCATACACACCACAAGAAATCTCAGCTATGATTTTACAAAACTTAAAAAATACA
GCTGAAAGCTATTTAGGTGAGAAAGTTGACAAAGCTGTAATTACAGTACCTGCATACTTT
AACGATGCTGAACGTCAAGCAACTAAAGATGCTGGTAAAATTGCTGGTTTAGAAGTTGAG
CGTATCATTAATGAACCAACAGCTGCAGCATTAGCATATGGTTTAGACAAAACTGATAAA
GATGAAAAAGTTCTTGTTTTTGACTTAGGTGGCGGTACATTTGACGTATCTATCCTAGAA
TTAGGTGACGGTGTATTCGAAGTACTATCAACAGCCGGTGACAACAAACTTGGCGGTGAT
GATTTTGACCAAGTAATTATTGACTACCTAGTTGCAGAATTCAAAAAAGAAAATGGCGTA
GACTTATCTCAAGATAAAATGGCATTACAACGTTTGAAAGATGCTGCTGAAAAAGCTAAA
AAAGACTTATCAGGTGTATCACAAACTCAAATCTCATTACCATTTATCTCAGCTGGTGAA
AACGGTCCATTACACTTAGAAGTAAACTTAACTCGTTCTAAATTTGAAGAATTATCAGAT
TCATTAATTAGAAGAACAATGGAACCTACACGCCAAGCAATGAAAGACGCTGGCTTAACA
AACTCAGATATCGATGAAGTTATCTTAGTTGGTGGATCAACTCGTATTCCAGCAGTACAA
GAAGCTGTCAAAAAAGAAATCGGTAAAGAGCCTAACAAAGGAGTAAACCCGGACGAAGTA
GTGGCAATGGGAGCTGCAATCCAAGGTGGCGTTATCACAGGTGACGTTAAAGACGTAGTA
TTATTAGACGTAACACCACTATCTTTAGGTATTGAAATTTTAGGTGGACGTATGAATACG
TTAATTGAACGTAACACTACGATTCCTACATCTAAATCTCAAATCTATTCAACAGCAGTA
GATAATCAACCATCAGTAGATGTACACGTATTACAAGGTGAACGTCCAATGGCTGCGGAT
AATAAAACACTTGGTAGATTCCAATTGACTGATATTCCACCAGCTGAACGTGGTAAACCT
CAAATTGAAGTAACGTTTGATATCGATAAAAACGGTATTGTAAATGTAACTGCAAAAGAC
TTAGGTACAAATAAAGAACAAAGAATTACAATTCAATCAAGTTCTTCATTATCAGACGAA
GAAATCGACCGTATGGTAAAAGATGCTGAAGTTAACGCTGAAGCAGATAAAAAACGTCGT
GAAGAAGTAGACTTAAGAAACGAAGCTGACAGTCTAGTATTCCAAGTTGAAAAAACTTTA
ACTGATTTAGGCGAAAATATCGGTGAAGAAGATAAAAAATCTGCTGAAGAGAAAAAAGAC
GCTCTTAAAACTGCTTTAGAAGGTCAAGATATAGAAGATATTAAATCTAAAAAAGAAGAA
CTTGAAAAAGTGATTCAAGAATTATCAGCAAAAGTATATGAGCAAGCGGCTCAACAGCAA
CAACAAGCACAAGGTGCTAATGCTGGTCAAAACAATGATAGTACTGTAGAAGATGCTGAA
TTTAAAGAAGTAAAAGACGACGACAAAAAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_RS08395 [old locus tag: SAUSA300_1540 ]
- symbol: SAUSA300_RS08395
- description: molecular chaperone DnaK
- length: 610
- theoretical pI: 4.38499
- theoretical MW: 66360.9
- GRAVY: -0.523279
⊟Function[edit | edit source]
- TIGRFAM: Protein fate Protein folding and stabilization chaperone protein DnaK (TIGR02350; HMM-score: 938.7)and 4 moreProtein fate Protein folding and stabilization Fe-S protein assembly chaperone HscA (TIGR01991; HMM-score: 574.4)Cell envelope Biosynthesis and degradation of murein sacculus and peptidoglycan cell shape determining protein, MreB/Mrl family (TIGR00904; HMM-score: 66.9)ethanolamine utilization protein EutJ family protein (TIGR02529; HMM-score: 59.7)Central intermediary metabolism Phosphorus compounds exopolyphosphatase (TIGR03706; EC 3.6.1.11; HMM-score: 13)
- TheSEED: see SAUSA300_1540
- PFAM: Actin_ATPase (CL0108) HSP70; Hsp70 protein (PF00012; HMM-score: 822.8)and 5 moreMreB_Mbl; MreB/Mbl protein (PF06723; HMM-score: 72.4)Hydantoinase_A; Hydantoinase/oxoprolinase (PF01968; HMM-score: 16.2)StbA; StbA protein (PF06406; HMM-score: 15.7)FtsA; Cell division protein FtsA (PF14450; HMM-score: 10.5)no clan defined DUF775; Protein of unknown function (DUF775) (PF05603; HMM-score: 7.9)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.97
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0.01
- Extracellular Score: 0.02
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.01916
- TAT(Tat/SPI): 0.001154
- LIPO(Sec/SPII): 0.025443
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI: 445956861 NCBI
- RefSeq: WP_000034716 NCBI
- UniProt: see SAUSA300_1540
⊟Protein sequence[edit | edit source]
- MSKIIGIDLGTTNSCVTVLEGDEPKVIQNPEGSRTTPSVVAFKNGETQVGEVAKRQAITNPNTVQSIKRHMGTDYKVDIEGKSYTPQEISAMILQNLKNTAESYLGEKVDKAVITVPAYFNDAERQATKDAGKIAGLEVERIINEPTAAALAYGLDKTDKDEKVLVFDLGGGTFDVSILELGDGVFEVLSTAGDNKLGGDDFDQVIIDYLVAEFKKENGVDLSQDKMALQRLKDAAEKAKKDLSGVSQTQISLPFISAGENGPLHLEVNLTRSKFEELSDSLIRRTMEPTRQAMKDAGLTNSDIDEVILVGGSTRIPAVQEAVKKEIGKEPNKGVNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIEILGGRMNTLIERNTTIPTSKSQIYSTAVDNQPSVDVHVLQGERPMAADNKTLGRFQLTDIPPAERGKPQIEVTFDIDKNGIVNVTAKDLGTNKEQRITIQSSSSLSDEEIDRMVKDAEVNAEADKKRREEVDLRNEADSLVFQVEKTLTDLGENIGEEDKKSAEEKKDALKTALEGQDIEDIKSKKEELEKVIQELSAKVYEQAAQQQQQAQGANAGQNNDSTVEDAEFKEVKDDDKK
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator: HrcA see SAUSA300_1540
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Artem Cherkasov, Michael Hsing, Roya Zoraghi, Leonard J Foster, Raymond H See, Nikolay Stoynov, Jihong Jiang, Sukhbir Kaur, Tian Lian, Linda Jackson, Huansheng Gong, Rick Swayze, Emily Amandoron, Farhad Hormozdiari, Phuong Dao, Cenk Sahinalp, Osvaldo Santos-Filho, Peter Axerio-Cilies, Kendall Byler, William R McMaster, Robert C Brunham, B Brett Finlay, Neil E Reiner
Mapping the protein interaction network in methicillin-resistant Staphylococcus aureus.
J Proteome Res: 2011, 10(3);1139-50
[PubMed:21166474] [WorldCat.org] [DOI] (I p)