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m (Text replacement - "<protect> =Summary= * <aureodatabase>organism" to "<protect> <aureodatabase>NCBI date</aureodatabase> =Summary= * <aureodatabase>organism") |
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* <aureodatabase>protein UniProt</aureodatabase> | * <aureodatabase>protein UniProt</aureodatabase> | ||
* <aureodatabase>protein RefSeq</aureodatabase> | * <aureodatabase>protein RefSeq</aureodatabase> | ||
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Revision as of 23:27, 10 March 2016
NCBI date : _
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_0675 [new locus tag: SAUSA300_RS03620 ]
- pan locus tag?: SAUPAN002573000
- symbol: SAUSA300_0675
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_0675 [new locus tag: SAUSA300_RS03620 ]
- symbol: SAUSA300_0675
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 748965..749252
- length: 288
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3914581 NCBI
- gene Genbank : _
⊟Phenotype[edit | edit source]
- Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241ATGACAAACGAAGATAAACGTTTCGAACAATTAAGATTTGAACGCAAATTTATAGTTATT
CCGTATTTAATTTATGCAGTCATTGTATTACTATTAAATATTTTCTATTCTGATTTGAAA
ATAACAATGACATTATTCGGACTTTTCTTTGCGTATAATGTAGTCATTTTGTTCATAGCA
TTTGTTAAACATTATAAACGCACATTGTTACTAAGTCTTATATTAACAGTGCTTAGTGGC
GCGGCATTCTTTGGAATTATTTATGTTTATGGCATTAATCATTTTTAA60
120
180
240
288
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_0675 [new locus tag: SAUSA300_RS03620 ]
- symbol: SAUSA300_0675
- description: hypothetical protein
- length: 95
- theoretical pI: 9.85429
- theoretical MW: 11226.5
- GRAVY: 0.988421
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED :
- FIG01107862: hypothetical protein
- PFAM: no clan defined PIG-F; GPI biosynthesis protein family Pig-F (PF06699; HMM-score: 13.2)and 2 moreDUF2070; Predicted membrane protein (DUF2070) (PF09843; HMM-score: 9.3)Hybrid (CL0105) DUF2254; Predicted membrane protein (DUF2254) (PF10011; HMM-score: 4.8)
⊟Structure, modifications & interactions[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
- interaction partners:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 3
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.000787
- TAT(Tat/SPI): 0.000168
- LIPO(Sec/SPII): 0.012465
- predicted transmembrane helices (TMHMM): 3
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MTNEDKRFEQLRFERKFIVIPYLIYAVIVLLLNIFYSDLKITMTLFGLFFAYNVVILFIAFVKHYKRTLLLSLILTVLSGAAFFGIIYVYGINHF
⊟Peptides[edit | edit source]
- experimentally validated:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- sigma factors : _
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.