NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_0039 [new locus tag: SAUSA300_RS00210 ]
- pan locus tag?: SAUPAN000446000
- symbol: SAUSA300_0039
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_0039 [new locus tag: SAUSA300_RS00210 ]
- symbol: SAUSA300_0039
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 49125..50912
- length: 1788
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3913650 NCBI
- RefSeq: YP_492759 NCBI
- BioCyc: GH3C-39 BioCyc
- MicrobesOnline: 1291554 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1741ATGAGTTACACATTGTTTGAAATTGGCCCATTTGCTTTAGATTCCTTCGGTTGGAAAGAA
ACGATACCACCTAAAAAAGATGGTGACAGTGAAAAAGTGGTTAGAATGGCTAGCCCTATT
ATTGTTAATGCAAGATTTTCTGATCCAATTACTGGTGTTGAAAAGTTGATTATTACTAAC
AACAATGGTAAAAAAGACATTTTTGAGTCTGATATCTTAACAACACGAAACTTACCTTCT
TTAATTAAATATGGCTACAGTATTAACGAGAAGTATATTAGATCATTGAGTTATGCCTTG
CAATTGATGCGAGATAGATTACCACTTTCTGAATTATATGAGGGTGTAGGTATACTAGAG
ACACCTTTTGGCTACTTGATATCGCTAGATAAAGTTCTCAAATCTATTCAATTTAATCAG
TCCTCACCTTCATACCCTATTGTAGATAGTGCTTATGACTTAACTCCTAAAGGTACATTT
GATAATTGGTTTAACATGTATATTGACGAGGTTAAAGGTCATCTTCTTTTAGAATTGGCA
GTCATATTTGGGATTTCTGCCTTAGTGACAAGTTTTCTGAAGCATAAACATGAAATCGAA
TTTGCAGGAATTCTCTTTAGTTTTACAGGTCAATCCTCAACCGGTAAGTCAACCGCAGCT
GCTTTAGCTGTATCAGTCGCTGGTAACCCTACCAAAGGTAATGAAACTCTTTTTAGAAGT
TGGAATGCCACACGAAACGCACTTGAAGGTTATTTGAGTAACAATTATGGCATTCCTATA
GTATTTGATGAGCTTTCATCTACGACACTTAGAGATACCACGGGTTTGTTATATTCCATC
GCTGAAGGTCAAGGTCGTCAACGTTCAAACGTTCATGGAGAAGTTAAAACGCCTAAGAAT
TGGGGTACTTCTGTCATTTCAACGTCAGAATACAGTATTTTTAATGATTCAGCTCAAAAC
GATGGATTACGTGTAAGAACCATCGAGATTAATGAACAATTCACTACAAATGCGACCAAT
GCTGACAATATTAAAAAAGCTGTAGCACTAAACTATGGTCATGTTTTACCGTTAGTAGCT
AAATATCTTATAAATCGTGAAGATGAAGTTATTCAATGGTTTTACAAGGAAGTAGATTGG
TTTGAAGCTAAATTGAAAGATGAAACAAACAATACAGGTATTCGTATGTTTAAGCGTTAT
GCAGTCATTACAACATCTGCGAAAATATTAGGTCGTGTTTTATCTACAGATATTGATATC
GCTAATATAAGAGACTACTTTATTGATTATCATACTCATACAGTCTCTGAACGCTCATTA
GCTGATAAAGCTATTGATGTCATCATTCAATTTGTGGCACAAAACAGAGGTAAGTTTTCA
GATGAAGGTGCTTTGAAAAATATGTTTGAGAACTATGGATTAATCTCATTAAAAGATGAC
CATATCGAAGTAAAAATAATTGCGAACGTTTTTAAACAGATGCTAAACAATCATCAATTT
CAAGATGTTAATAATGTTGTCAACGCCTTAAGAGATAAAGGTTTCATATTAGCTGACCGT
GGACGCCAAACAACTAAAAGAAGTGTCAAAGATAATAGCGGTAAAAAACAATCACTTGTA
TTTTACCATCTAAAATTAGATGTAGAGTTTGCATCTATCCTCGGATTAACTAAAGATAAG
TCGTTACTTCAAAATTGGACACCGTCAAATGATAACAAAGCTGCGAAAGAACTTTTTAAA
TCCGCTAATGAAGGGATAGGCCCTTCAGGAGTTCACGAAGATTTCTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_0039 [new locus tag: SAUSA300_RS00210 ]
- symbol: SAUSA300_0039
- description: hypothetical protein
- length: 595
- theoretical pI: 6.93436
- theoretical MW: 66836.2
- GRAVY: -0.281008
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED :
- FIG01108399: hypothetical protein
- PFAM: P-loop_NTPase (CL0023) DUF927; Domain of unknown function (DUF927) (PF06048; HMM-score: 213.6)and 2 moreAAA_29; P-loop containing region of AAA domain (PF13555; HMM-score: 14.6)Thioredoxin (CL0172) GSHPx; Glutathione peroxidase (PF00255; HMM-score: 12.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helix: 1
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 0.83
- Signal peptide possibility: -1
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.009444
- TAT(Tat/SPI): 0.000595
- LIPO(Sec/SPII): 0.003162
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MSYTLFEIGPFALDSFGWKETIPPKKDGDSEKVVRMASPIIVNARFSDPITGVEKLIITNNNGKKDIFESDILTTRNLPSLIKYGYSINEKYIRSLSYALQLMRDRLPLSELYEGVGILETPFGYLISLDKVLKSIQFNQSSPSYPIVDSAYDLTPKGTFDNWFNMYIDEVKGHLLLELAVIFGISALVTSFLKHKHEIEFAGILFSFTGQSSTGKSTAAALAVSVAGNPTKGNETLFRSWNATRNALEGYLSNNYGIPIVFDELSSTTLRDTTGLLYSIAEGQGRQRSNVHGEVKTPKNWGTSVISTSEYSIFNDSAQNDGLRVRTIEINEQFTTNATNADNIKKAVALNYGHVLPLVAKYLINREDEVIQWFYKEVDWFEAKLKDETNNTGIRMFKRYAVITTSAKILGRVLSTDIDIANIRDYFIDYHTHTVSERSLADKAIDVIIQFVAQNRGKFSDEGALKNMFENYGLISLKDDHIEVKIIANVFKQMLNNHQFQDVNNVVNALRDKGFILADRGRQTTKRSVKDNSGKKQSLVFYHLKLDVEFASILGLTKDKSLLQNWTPSNDNKAAKELFKSANEGIGPSGVHEDF
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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