⊟Summary[edit | edit source]
- pan ID?: SAUPAN006275000
- symbol?: —
- synonym:
- description?: TetR/AcrR family transcriptional regulator
- TetR/AcrR family transcriptional regulator
- TetR family transcriptional regulator
- TetR family transcriptional regulator, putative
- transcriptional regulator TetR family protein
- bacterial regulatory s, tetR family protein
- DNA-binding protein
- putative DNA-binding protein
- putative TetR-family transcriptional regulator
- TetR family regulatory protein
- Transcriptional regulator, TetR family
- transcriptional regulators, AcrR family
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 6325909..6326496
- synteny block?: BlockID0049980
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2531
08BA02176:
C248_2654
11819-97:
MS7_2599
6850:
RSAU_002434
71193:
ST398NM01_2643
ECT-R 2:
ECTR2_2447
ED133:
SAOV_2638c
ED98:
SAAV_2659
HO 5096 0412:
SAEMRSA15_24960
JH1:
SaurJH1_2669
JH9:
SaurJH9_2615
JKD6008:
SAA6008_02652
JKD6159:
SAA6159_02490
LGA251:
SARLGA251_23670
M013:
M013TW_2567
MRSA252:
SAR2673
MSHR1132:
SAMSHR1132_24090
MSSA476:
SAS2479
Mu3:
SAHV_2577
Mu50:
SAV2593
MW2:
MW2513
RF122:
SAB2468c
ST398:
SAPIG2643
T0131:
SAT0131_02827
TCH60:
HMPREF0772_10598
TW20:
SATW20_27340
USA300_TCH1516:
USA300HOU_2588
VC40:
SAVC_11845
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MTIDRRIRKSQVAMRNAFIELLHQHQLEEITVQQIADLADVNRSTFYTHYYDKYDLLEKL
N315 MTIDRRIRKSQVAMRNAFIELLHQHQLEEITVQQIADLADVNRSTFYTHYYDKYDLLEKL
NCTC8325 MTIDRRIRKSQVAMRNAFIELLHQHQLEEITVQQIADLADVNRSTFYTHYYDKYDLLEKL
Newman MTIDRRIRKSQVAMRNAFIELLHQHQLEEITVQQIADLADVNRSTFYTHYYDKYDLLEKL
USA300_FPR3757 MTIDRRIRKSQVAMRNAFIELLHQHQLEEITVQQIADLADVNRSTFYTHYYDKYDLLEKL
************************************************************
COL EDQQLEEIRDFIHDEKLNGAVKLSTDNIHQIMTVLIEMIEKDIAFYQLMFRMGKDSNIHE
N315 EDQQLEEIRDFIHDEKLNGAVKLSTDNIHQIMTVLIDMIEKDIAFYQLMFRMGKDSNIHE
NCTC8325 EDQQLEEIRDFIHDEKLNGAVKLSTDNIHQIMTVLIEMIEKDIAFYQLMFRMGKDSNIHE
Newman EDQQLEEIRDFIHDEKLNGAVKLSTDNIHQIMTVLIEMIEKDIAFYQLMFRMGKDSNIHE
USA300_FPR3757 EDQQLEEIRDFIHDEKLNGAVKLSTDNIHQIMTVLIEMIEKDIAFYQLMFRMGKDSNIHE
************************************:***********************
COL KLYDLIMCHLQRYKNENDQINGIPFSYFMSYVSGAGLSFIRHWVEDPNRIDKVDLIRHFN
N315 KLYDLIMCHLQRYKNENDQINGIPFSYFMSYVSGAGLSLIRHWVEDPNRIDKVDLIMHFN
NCTC8325 KLYDLIMCHLQRYKNENDQINGIPFSYFMSYVSGAGLSFIRHWVEDPNRIDKVDLIRHFN
Newman KLYDLIMCHLQRYKNENDQINGIPFSYFMSYVSGAGLSFIRHWVEDPNRIDKVDLIRHFN
USA300_FPR3757 KLYDLIMCHLQRYKNENDQINGIPFSYFMSYVSGAGLSFIRHWVEDPNRIDKVDLIRHFN
**************************************:***************** ***
COL TIVNQGPATIIKNIQ
N315 TIVNQGPATIIKNIQ
NCTC8325 TIVNQGPATIIKNIQ
Newman TIVNQGPATIIKNIQ
USA300_FPR3757 TIVNQGPATIIKNIQ
***************