⊟Summary[edit | edit source]
- pan ID?: SAUPAN006169000
- symbol?: ddh
- synonym:
- description?: D-lactate dehydrogenase
- D-lactate dehydrogenase
- lactate dehydrogenase
- D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein
- D-lactate dehydrogenase (D-LDH) (D-specific D-2-hydroxyacid dehydrogenase)
- D-specific D-2-hydroxyacid dehydrogenase
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 6240409..6241473
- synteny block?: BlockID0048940
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2460 (ddh)
08BA02176:
C248_2582 (ddh)
11819-97:
MS7_2530
6850:
RSAU_002365 (ldhD)
71193:
ST398NM01_2576
ECT-R 2:
ECTR2_2376
ED133:
SAOV_2568
ED98:
SAAV_2589
HO 5096 0412:
SAEMRSA15_24220 (ddh)
JH1:
SaurJH1_2599
JH9:
SaurJH9_2547
JKD6008:
SAA6008_02562
JKD6159:
SAA6159_02420
LGA251:
SARLGA251_22990 (ddh)
M013:
M013TW_2496
MRSA252:
SAR2605 (ddh)
MSHR1132:
SAMSHR1132_23450
MSSA476:
SAS2410
Mu3:
SAHV_2508 (ddh)
Mu50:
SAV2524 (ddh)
MW2:
MW2444 (ddh)
RF122:
SAB2398 (ddh)
ST398:
SAPIG2576
T0131:
SAT0131_02727
TCH60:
HMPREF0772_10669 (ldhD2)
TW20:
SATW20_26450 (ddh)
USA300_TCH1516:
USA300HOU_2513 (ddh)
VC40:
SAVC_11495
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL ---------------------MTKIMFFGTRDYEKEMALNWGKKNNVEVTTSKELLSSAT
N315 MYIIFNFTHLLFNLLKARFLIMTKIMFFGTRDYEKEMALNWGKKNNVEVTTSKELLSSAT
NCTC8325 ------------------------------------MALNWGKKNNVEVTTSKELLSSAT
Newman ------------------------------------MALNWGKKNNVEVTTSKELLSSAT
USA300_FPR3757 MCIIFNFTHLLFNLLKARFLIMTKIMFFGTRDYEKEMALNWGKKNNVEVTTSKELLSSAT
************************
COL VDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVP
N315 VDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVP
NCTC8325 VDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVP
Newman VDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVP
USA300_FPR3757 VDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVP
************************************************************
COL SYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGA
N315 SYSPETIAEYSVSIALQLVRRFPDIERRVQTHDFTWQAEIMSKPVKNMTVAIIGTGRIGA
NCTC8325 SYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGA
Newman SYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGA
USA300_FPR3757 SYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGA
******************************:*****************************
COL ATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKA
N315 ATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKA
NCTC8325 ATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKA
Newman ATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKA
USA300_FPR3757 ATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKA
************************************************************
COL MFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDD
N315 MFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDD
NCTC8325 MFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDD
Newman MFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDD
USA300_FPR3757 MFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDD
************************************************************
COL KTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALSVINTGTCETRLN
N315 KTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALSVINTGTCETRLN
NCTC8325 KTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALSVINTGTCETRLN
Newman KTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALSVINTGTCETRLN
USA300_FPR3757 KTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALSVINTGTCETRLN
***************************************************