PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN006132000
• symbol^?: gntR
• synonym:
• description^?: gluconate operon transcriptional repressor

  descriptions from strain specific annotations:

  • gluconate operon transcriptional repressor
  • GntR family transcriptional regulator
  • gluconate operon transcriptional repressor, putative
  • bacterial regulatory s, gntR family protein
  • gluconate operon transcriptional repressor (P28 protein)
• strand^?: -
• coordinates^?: 6207926..6208603
• synteny block^?: BlockID0048640
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2516 (gntR)
N315:
SA2295 (gntR)
NCTC8325:
SAOUHSC_02809
Newman:
NWMN_2403 (gntR)
USA300_FPR3757:
SAUSA300_2444 (gntR)
04-02981:
SA2981_2443 (gntR)
08BA02176:
C248_2559 (gntR)
11819-97:
MS7_2510
6850:
RSAU_002344 (gntR)
71193:
ST398NM01_2557
ECT-R 2:
ECTR2_2359
ED133:
SAOV_2548c
ED98:
SAAV_2572 (gntR)
HO 5096 0412:
SAEMRSA15_24030 (gntR)
JH1:
SaurJH1_2582
JH9:
SaurJH9_2530
JKD6008:
SAA6008_02542 (gntR)
JKD6159:
SAA6159_02401 (gntR)
LGA251:
SARLGA251_22800 (gntR)
M013:
M013TW_2472
MRSA252:
SAR2584 (gntR)
MSHR1132:
SAMSHR1132_23250
MSSA476:
SAS2392
Mu3:
SAHV_2491 (gntR)
Mu50:
SAV2507 (gntR)
MW2:
MW2425 (gntR)
RF122:
SAB2379c (gntR)
ST398:
SAPIG2557
T0131:
SAT0131_02705
TCH60:
HMPREF0772_10690 (gntR)
TW20:
SATW20_26260 (gntR)
USA300_TCH1516:
USA300HOU_2494 (gntR)
VC40:
SAVC_11400

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MMYGYPEKWLEGMTTGEGIAAELRLGIVNGHIAEGTLLTENQMAKQFNVSRSPIRDAFKL
  N315            MMYGYPEKWLEGMTTGEGIAAELRLGIVNGHIAEGTLLTENQMAKQFNVSRSPIRDAFKL
  NCTC8325        MMYGYPEKWLEGMTTGEGIAAELRLGIVNGHIAEGTLLTENQMAKQFNVSRSPIRDAFKL
  Newman          MMYGYPEKWLEGMTTGEGIAAELRLGIVNGHIAEGTLLTENQMAKQFNVSRSPIRDAFKL
  USA300_FPR3757  MMYGYPEKWLEGMTTGEGIAAELRLGIVNGHIAEGTLLTENQMAKQFNVSRSPIRDAFKL
                  ************************************************************
  
  COL             LQQNQLIQLERMGAHVLPFGEQEKKEMYDLRLMLESFAFSRVKNQERLPIVKEMKKQLEM
  N315            LQQNQLIQLERMGAHVLPFGEQEKKEMYDLRLMLESFAFSRVKNQERLPIVKEMKKQLEM
  NCTC8325        LQQNQLIQLERMGAHVLPFGEQEKKEMYDLRLMLESFAFSRVKNQERLPIVKEMKKQLEM
  Newman          LQQNQLIQLERMGAHVLPFGEQEKKEMYDLRLMLESFAFSRVKNQERLPIVKEMKKQLEM
  USA300_FPR3757  LQQNQLIQLERMGAHVLPFGEQEKKEMYDLRLMLESFAFSRVKNQERLPIVKEMKKQLEM
                  ************************************************************
  
  COL             MKVAVKFEDAESFTKHDFEFHETLIKASNHQYLNSFWSHLKPVMMALVLTSMRQRMQQNP
  N315            MKVAVKFEDAESFTKHDFEFHETLIKASNHQYLNSFWSHLKPVMMALVLTSMRQRMQQNP
  NCTC8325        MKVAVKFEDAESFTKHDFEFHETLIKASNHQYLNSFWSHLKPVMMALVLTSMRQRMQQNP
  Newman          MKVAVKFEDAESFTKHDFEFHETLIKASNHQYLNSFWSHLKPVMMALVLTSMRQRMQQNP
  USA300_FPR3757  MKVAVKFEDAESFTKHDFEFHETLIKASNHQYLNSFWSHLKPVMMALVLTSMRQRMQQNP
                  ************************************************************
  
  COL             QDFERIHHNHQVFIDAVEQYDSQILKEAFHLNFDDVGKDIEGFWLN
  N315            QDFERIHHNHQVFIDAVEQYDSQILKEAFHLNFDDVGKDIEGFWLN
  NCTC8325        QDFERIHHNHQVFIDAVEQYDSQILKEAFHLNFDDVGKDIEGFWLN
  Newman          QDFERIHHNHQVFIDAVEQYDSQILKEAFHLNFDDVGKDIEGFWLN
  USA300_FPR3757  QDFERIHHNHQVFIDAVEQYDSQILKEAFHLNFDDVGKDIEGFWLN
                  **********************************************