⊟Summary[edit | edit source]
- pan ID?: SAUPAN006025000
- symbol?: cntC
- synonym:
- description?: nickel ABC transporter permease
- nickel ABC transporter permease
- ABC transporter permease
- oligopeptide ABC transporter, permease, putative
- oligopeptide ABC transporter permease
- oligopeptide transporter permease
- oligopeptide transporter putative membrane permease
- peptide ABC transporter permease
- Oligopeptide transporter putative membrane permease domain protein
- oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein
- binding--dependent transport system inner membrane component family protein
- binding-protein-dependent transport system inner membrane component family protein
- binding-protein-dependent transport systems inner membrane component
- nickel transport system permease protein
- oligopeptide ABC transporter membrane protein
- oligopeptide ABC transporter permease Opp-1C
- oligopeptide transporter membrane permease
- opp-1C protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 6081388..6082257
- synteny block?: BlockID0047690
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2402 (opp-1C)
08BA02176:
C248_2515 (opp-1C)
11819-97:
MS7_2478
6850:
RSAU_002303 (opp1C)
71193:
ST398NM01_2515
ECT-R 2:
ECTR2_2322
ED133:
SAOV_2515c
ED98:
SAAV_2531
HO 5096 0412:
SAEMRSA15_23630 (opp-1C)
JH1:
SaurJH1_2541
JH9:
SaurJH9_2492
JKD6008:
SAA6008_02506 (opp-1C)
JKD6159:
SAA6159_02362 (opp-1C)
LGA251:
SARLGA251_22450 (opp-1C)
M013:
M013TW_2425
MRSA252:
SAR2552 (opp-1C)
MSHR1132:
SAMSHR1132_22900
MSSA476:
SAS2356
Mu3:
SAHV_2449
Mu50:
SAV2465
MW2:
MW2389 (opp-1C)
RF122:
SAB2348c (opp1C)
ST398:
SAPIG2515
T0131:
SAT0131_02664 (fmhC)
TCH60:
HMPREF0772_10724 (opp-1C)
TW20:
SATW20_25930 (opp-1C)
USA300_TCH1516:
USA300HOU_2456
VC40:
SAVC_11195
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MIILKRLLQDKGAVIALGIIVLYVFLGLAAPLVTFYDPNHIDTANKFAGMSFQHLLGTDH
N315 MIILKRLLQDKGAVIALGIIVLYVFLGLAAPLVTFYDPNHIDTANKFAGISFQHLLGTDH
NCTC8325 MIILKRLLQDKGAVIALGIIVLYVFLGLAAPLVTFYDPNHIDTANKFAGMSFQHLLGTDH
Newman MIILKRLLQDKGAVIALGIIVLYVFLGLAAPLVTFYDPNHIDTANKFAGMSFQHLLGTDH
USA300_FPR3757 MIILKRLLQDKGAVIALGIIVLYVFLGLAAPLVTFYDPNHIDTANKFAGMSFQHLLGTDH
*************************************************:**********
COL LGRDILTRLIYAIRPSLLYVFVALFVSVLIGSILGFLSGYFQGFVDALIMRACDVMLAFP
N315 LGRDILTRLIYAIRPSLLYVFVALFVSVLIGSILGFLSGYFQGFVDALIMRACDVMLAFP
NCTC8325 LGRDILTRLIYAIRPSLLYVFVALFVSVLIGSILGFLSGYFQGFVDALIMRACDVMLAFP
Newman LGRDILTRLIYAIRPSLLYVFVALFVSVLIGSILGFLSGYFQGFVDALIMRACDVMLAFP
USA300_FPR3757 LGRDILTRLIYAIRPSLLYVFVALFVSVLIGSILGFLSGYFQGFVDALIMRACDVMLAFP
************************************************************
COL SYVVTLALIALFGMGAENIIMAFILTRWAWFCRVIRTSVMQYTASDHVRFAKTIGMNDMK
N315 SYVVTLALIALFGMGAENIIMAFILTRWAWFCRVIRTSVMQYTASDHVRFAKTIGMNDMK
NCTC8325 SYVVTLALIALFGMGAENIIMAFILTRWAWFCRVIRTSVMQYTASDHVRFAKTIGMNDMK
Newman SYVVTLALIALFGMGAENIIMAFILTRWAWFCRVIRTSVMQYTASDHVRFAKTIGMNDMK
USA300_FPR3757 SYVVTLALIALFGMGAENIIMAFILTRWAWFCRVIRTSVMQYTASDHVRFAKTIGMNDMK
************************************************************
COL IIHKHIMPLTLADIAIISSSSMCSMILQISGFSFLGLGVKAPTAEWGMMLNEARKVMFTH
N315 IIHKHIMPLTLADIAIISSSSMCSMILQISGFSFLGLGVKAPTAEWGMMLNEARKVMFTH
NCTC8325 IIHKHIMPLTLADIAIISSSSMCSMILQISGFSFLGLGVKAPTAEWGMMLNEARKVMFTH
Newman IIHKHIMPLTLADIAIISSSSMCSMILQISGFSFLGLGVKAPTAEWGMMLNEARKVMFTH
USA300_FPR3757 IIHKHIMPLTLADIAIISSSSMCSMILQISGFSFLGLGVKAPTAEWGMMLNEARKVMFTH
************************************************************
COL PEMMFAPGIAIVIIVMAFNFLSDALQIAIDPRISSKDKLRSVKKGVVQS
N315 PEMMFAPGIAIVIIVMAFNFLSDALQIAIDPRISSKDKLRSVKKGVVQS
NCTC8325 PEMMFAPGIAIVIIVMAFNFLSDALQIAIDPRISSKDKLRSVKKGVVQS
Newman PEMMFAPGIAIVIIVMAFNFLSDALQIAIDPRISSKDKLRSVKKGVVQS
USA300_FPR3757 PEMMFAPGIAIVIIVMAFNFLSDALQIAIDPRISSKDKLRSVKKGVVQS
*************************************************