⊟Summary[edit | edit source]
- pan ID?: SAUPAN005997000
- symbol?: opuCD
- synonym:
- description?: amino acid ABC transporter permease
- amino acid ABC transporter permease
- glycine betaine/carnitine/choline transport system permease
- ABC transporter permease
- glycine betaine/carnitine/choline ABC transporter opuCD
- glycine betaine-carnitine-choline ABC transporter, permease, putative
- OsmotiCALL import_20_25_26_pangenomey activated L-carnitine/choline ABC transporter, permease protein OpuCD
- putative glycine betaine/carnitine/cholinetransport system permease protein
- betaine-carnitine-choline ABC transporter
- binding--dependent transport system inner membrane component family protein
- binding-protein-dependent transport system inner membrane protein
- glycine betaine/carnitine/choline ABC transporter permease
- glycine betaine/carnitine/choline transport system permease OpuCD
- glycine betaine/carnitine/choline transport system permease proteinopuCD
- glycine betaine/L-proline ABC superfamily ATP binding cassette transporter, membrane protein
- glycine betaine/L-proline ABC superfamily ATP binding cassette transporter, permease protein
- glycine betaine/L-proline ABC transporter membrane protein
- glycine betaine transport system permease
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 6059272..6059967
- synteny block?: BlockID0047410
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2382 (opuCD)
08BA02176:
C248_2495 (opuCD)
11819-97:
MS7_2459
6850:
RSAU_002285 (opuCD)
71193:
ST398NM01_2497
ECT-R 2:
ECTR2_2303
ED133:
SAOV_2495c
ED98:
SAAV_2511
HO 5096 0412:
SAEMRSA15_23450 (opuCD)
JH1:
SaurJH1_2520
JH9:
SaurJH9_2472
JKD6008:
SAA6008_02487 (opuCD)
JKD6159:
SAA6159_02343 (opuCD)
LGA251:
SARLGA251_22260 (opuCD)
M013:
M013TW_2408
MRSA252:
SAR2535 (opuCD)
MSHR1132:
SAMSHR1132_22730
MSSA476:
SAS2337
Mu3:
SAHV_2429 (opuCD)
Mu50:
SAV2445 (opuCD)
MW2:
MW2369 (opuCD)
RF122:
SAB2327c (opuCD)
ST398:
SAPIG2497
T0131:
SAT0131_02644 (smc)
TCH60:
HMPREF0772_10743 (opuCD)
TW20:
SATW20_25740 (opuCD)
USA300_TCH1516:
USA300HOU_2434 (opuCD)
VC40:
SAVC_11100
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MEGNLLQQLFNYYVTNFGYLWDLFFKHLLMSVYGVLFAALIGIPLGILLARYTKLSGFVI
N315 MEGNLLQQLFNYYVTNFGYLWDLFFKHLLMSVYGVLFAALIGIPLGILLARYTKLSGFVI
NCTC8325 MEGNLLQQLFNYYVTNFGYLWDLFFKHLLMSVYGVLFAALIGIPLGILLARYTKLSGFVI
Newman MEGNLLQQLFNYYVTNFGYLWDLFFKHLLMSVYGVLFAALIGIPLGILLARYTKLSGFVI
USA300_FPR3757 MEGNLLQQLFNYYVTNFGYLWDLFFKHLLMSVYGVLFAALIGIPLGILLARYTKLSGFVI
************************************************************
COL TIANIIQTVPVIAMLAILMLVMGLGSETVVLTVFLYALLPIIKNTYTGIASVDANIKDAG
N315 TIANIIQTVPVIAMLAILMLVMGLGSETVVLTVFLYALLPIIKNTYTGIASVDANIKDAG
NCTC8325 TIANIIQTVPVIAMLAILMLVMGLGSETVVLTVFLYALLPIIKNTYTGIASVDANIKDAG
Newman TIANIIQTVPVIAMLAILMLVMGLGSETVVLTVFLYALLPIIKNTYTGIASVDANIKDAG
USA300_FPR3757 TIANIIQTVPVIAMLAILMLVMGLGSETVVLTVFLYALLPIIKNTYTGIASVDANIKDAG
************************************************************
COL KGMGMTRNQVLRMIELPLSVSVIIGGIRIALVVAIGVVAVGSFIGAPTLGDIVIRGTNAT
N315 KGMGMTRNQVLRMIELPLSVSVIIGGIRIALVVAIGVVAVGSFIGAPTLGDIVIRGTNAT
NCTC8325 KGMGMTRNQVLRMIELPLSVSVIIGGIRIALVVAIGVVAVGSFIGAPTLGDIVIRGTNAT
Newman KGMGMTRNQVLRMIELPLSVSVIIGGIRIALVVAIGVVAVGSFIGAPTLGDIVIRGTNAT
USA300_FPR3757 KGMGMTRNQVLRMIELPLSVSVIIGGIRIALVVAIGVVAVGSFIGAPTLGDIVIRGTNAT
************************************************************
COL DGTTFILAGAIPIAIIAIVIDVLLRFLEKRLDPTTRHRKNQSNHRPQSINM
N315 DGTTFILAGAIPIAIIAIVIDVLLRFLEKRLDPTTRHRKNQSNHRPQSINM
NCTC8325 DGTTFILAGAIPIAIIAIVIDVLLRFLEKRLDPTTRHRKNQSNHRPQSINM
Newman DGTTFILAGAIPIAIIAIVIDVLLRFLEKRLDPTTRHRKNQSNHRPQSINM
USA300_FPR3757 DGTTFILAGAIPIAIIAIVIDVLLRFLEKRLDPTTRHRKNQSNHRPQSINM
***************************************************