PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005690000
• symbol^?: rplE
• synonym:
• description^?: 50S ribosomal protein L5

  descriptions from strain specific annotations:

  • 50S ribosomal protein L5
  • 50S ribosomal protein L5 (BL6)
• strand^?: -
• coordinates^?: 5804932..5805423
• synteny block^?: BlockID0044360
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2227 (rplE)
N315:
SA2035 (rplE)
NCTC8325:
SAOUHSC_02500 (rplE)
Newman:
NWMN_2140 (rplE)
USA300_FPR3757:
SAUSA300_2192 (rplE)
04-02981:
SA2981_2176 (rplE)
08BA02176:
C248_2274 (rplE)
11819-97:
MS7_2258 (rplE)
6850:
RSAU_002074 (rplE)
71193:
ST398NM01_2291
ECT-R 2:
ECTR2_2100
ED133:
SAOV_2275c
ED98:
SAAV_2300 (rplE)
HO 5096 0412:
SAEMRSA15_21370 (rplE)
JH1:
SaurJH1_2306 (rplE)
JH9:
SaurJH9_2265 (rplE)
JKD6008:
SAA6008_02275 (rplE)
JKD6159:
SAA6159_02145 (rplE)
LGA251:
SARLGA251_20240 (rplE)
M013:
M013TW_2197
MRSA252:
SAR2323 (rplE)
MSHR1132:
SAMSHR1132_20640
MSSA476:
SAS2129 (rplE)
Mu3:
SAHV_2222 (rplE)
Mu50:
SAV2238 (rplE)
MW2:
MW2157 (rplE)
RF122:
SAB2110c (rplE)
ST398:
SAPIG2291
T0131:
SAT0131_02411 (pdhD)
TCH60:
HMPREF0772_10960 (rplE)
TW20:
SATW20_23720 (rplE)
USA300_TCH1516:
USA300HOU_2229 (rplE)
VC40:
SAVC_10060 (rplE)

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MNRLKEKFNTEVTENLMKKFNYSSVMEVPKIDKIVVNMGVGDAVQNSKVLDNAVEELELI
  N315            MNRLKEKFNTEVTENLMKKFNYSSVMEVPKIDKIVVNMGVGDAVQNSKVLDNAVEELELI
  NCTC8325        MNRLKEKFNTEVTENLMKKFNYSSVMEVPKIDKIVVNMGVGDAVQNSKVLDNAVEELELI
  Newman          MNRLKEKFNTEVTENLMKKFNYSSVMEVPKIDKIVVNMGVGDAVQNSKVLDNAVEELELI
  USA300_FPR3757  MNRLKEKFNTEVTENLMKKFNYSSVMEVPKIDKIVVNMGVGDAVQNSKVLDNAVEELELI
                  ************************************************************
  
  COL             TGQKPLVTKAKKSIATFRLREGMPIGAKVTLRGERMYEFLDKLISVSLPRVRDFQGVSKK
  N315            TGQKPLVTKAKKSIATFRLREGMPIGAKVTLRGERMYEFLDKLISVSLPRVRDFQGVSKK
  NCTC8325        TGQKPLVTKAKKSIATFRLREGMPIGAKVTLRGERMYEFLDKLISVSLPRVRDFQGVSKK
  Newman          TGQKPLVTKAKKSIATFRLREGMPIGAKVTLRGERMYEFLDKLISVSLPRVRDFQGVSKK
  USA300_FPR3757  TGQKPLVTKAKKSIATFRLREGMPIGAKVTLRGERMYEFLDKLISVSLPRVRDFQGVSKK
                  ************************************************************
  
  COL             AFDGRGNYTLGVKEQLIFPEIDYDKVSKVRGMDIVIVTTANTDEEARELLANFGMPFRK
  N315            AFDGRGNYTLGVKEQLIFPEIDYDKVSKVRGMDIVIVTTANTDEEARELLANFGMPFRK
  NCTC8325        AFDGRGNYTLGVKEQLIFPEIDYDKVSKVRGMDIVIVTTANTDEEARELLANFGMPFRK
  Newman          AFDGRGNYTLGVKEQLIFPEIDYDKVSKVRGMDIVIVTTANTDEEARELLANFGMPFRK
  USA300_FPR3757  AFDGRGNYTLGVKEQLIFPEIDYDKVSKVRGMDIVIVTTANTDEEARELLANFGMPFRK
                  ***********************************************************