PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005677000
• symbol^?: rpsK
• synonym:
• description^?: 30S ribosomal protein S11

  descriptions from strain specific annotations:

  • 30S ribosomal protein S11
  • 30S ribosomal protein S11 (BS11)
• strand^?: -
• coordinates^?: 5798802..5799191
• synteny block^?: BlockID0044230
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2214 (rpsK)
N315:
SA2024 (rpsK)
NCTC8325:
SAOUHSC_02486
Newman:
NWMN_2127 (rpsK)
USA300_FPR3757:
SAUSA300_2179 (rpsK)
04-02981:
SA2981_2163 (rpsK)
08BA02176:
C248_2261 (rpsK)
11819-97:
MS7_2245 (rpsK)
6850:
RSAU_002061 (rpsK)
71193:
ST398NM01_2278
ECT-R 2:
ECTR2_2087
ED133:
SAOV_2263c
ED98:
SAAV_2287 (rpsK)
HO 5096 0412:
SAEMRSA15_21240 (rpsK)
JH1:
SaurJH1_2293
JH9:
SaurJH9_2252
JKD6008:
SAA6008_02262 (rpsK)
JKD6159:
SAA6159_02132 (rpsK)
LGA251:
SARLGA251_20110 (rpsK)
M013:
M013TW_2185
MRSA252:
SAR2310 (rpsK)
MSHR1132:
SAMSHR1132_20510
MSSA476:
SAS2116
Mu3:
SAHV_2209 (rpsK)
Mu50:
SAV2225 (rpsK)
MW2:
MW2144 (rpsK)
RF122:
SAB2098c (rpsK)
ST398:
SAPIG2278 (rpsK)
T0131:
SAT0131_02398 (ptsH)
TCH60:
HMPREF0772_10973 (rpsK)
TW20:
SATW20_23590 (rpsK)
USA300_TCH1516:
USA300HOU_2216 (rpsK)
VC40:
SAVC_09995

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MARKQVSRKRRVKKNIENGVAHIRSTFNNTIVTITDEFGNALSWSSAGALGFKGSKKSTP
  N315            MARKQVSRKRRVKKNIENGVAHIRSTFNNTIVTITDEFGNALSWSSAGALGFKGSKKSTP
  NCTC8325        MARKQVSRKRRVKKNIENGVAHIRSTFNNTIVTITDEFGNALSWSSAGALGFKGSKKSTP
  Newman          MARKQVSRKRRVKKNIENGVAHIRSTFNNTIVTITDEFGNALSWSSAGALGFKGSKKSTP
  USA300_FPR3757  MARKQVSRKRRVKKNIENGVAHIRSTFNNTIVTITDEFGNALSWSSAGALGFKGSKKSTP
                  ************************************************************
  
  COL             FAAQMASETASKSAMEHGLKTVEVTVKGPGPGRESAIRALQSAGLEVTAIRDVTPVPHNG
  N315            FAAQMASETASKSAMEHGLKTVEVTVKGPGPGRESAIRALQSAGLEVTAIRDVTPVPHNG
  NCTC8325        FAAQMASETASKSAMEHGLKTVEVTVKGPGPGRESAIRALQSAGLEVTAIRDVTPVPHNG
  Newman          FAAQMASETASKSAMEHGLKTVEVTVKGPGPGRESAIRALQSAGLEVTAIRDVTPVPHNG
  USA300_FPR3757  FAAQMASETASKSAMEHGLKTVEVTVKGPGPGRESAIRALQSAGLEVTAIRDVTPVPHNG
                  ************************************************************
  
  COL             CRPPKRRRV
  N315            CRPPKRRRV
  NCTC8325        CRPPKRRRV
  Newman          CRPPKRRRV
  USA300_FPR3757  CRPPKRRRV
                  *********