⊟Summary[edit | edit source]
- pan ID?: SAUPAN005375000
- symbol?: thiD
- synonym:
- description?: bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase
- bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase
- phosphomethylpyrimidine kinase
- 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (phosphomethylpyrimidine kinase), putative
- bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase
- hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
- hydroxymethylpyrimidine kinase
- phosphomethylpyrimidine kinase (HMP-phosphate kinase)(HMP-P kinase)
- pseudogene
- putative phosphomethylpyrimidine kinase
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5545829..5546659
- synteny block?: BlockID0041720
- occurrence?: in 97% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2034 (thiD)
08BA02176:
C248_2106 (thiD)
11819-97:
MS7_2109 (thiD)
6850:
RSAU_001932 (thiD)
71193:
ST398NM01_2136
ECT-R 2:
ECTR2_1949 (thiD)
ED133:
SAOV_2134c (thiD2)
ED98:
SAAV_2147 (thiD2)
HO 5096 0412:
SAEMRSA15_20020 (thiD)
JH1:
SaurJH1_2168
JH9:
SaurJH9_2130
JKD6008:
SAA6008_02131 (thiD)
JKD6159:
SAA6159_02007 (thiD)
LGA251:
SARLGA251_18950 (thiD)
M013:
M013TW_2051
MRSA252:
SAR2182 (thiD)
MSHR1132:
SAMSHR1132_19170
MSSA476:
SAS1997
Mu3:
SAHV_2078 (thiD)
Mu50:
SAV2093 (thiD)
MW2:
MW2016 (thiD)
RF122:
SAB1977c (thiD)
ST398:
SAPIG2136 (thiD)
T0131:
SAT0131_02253 (clpB)
TCH60:
HMPREF0772_11098 (thiD)
TW20:
SATW20_22320 (thiD)
USA300_TCH1516:
—
VC40:
SAVC_09345
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MIKPKIALTIAGTDPTGGAGVMADLKSFHSCGVYGMGVVTSIVAQNTLGVQHIHNLNHQW
N315 MIKPKIALTIAGTDPTGGAGVMADLKSFHSCGVYGMGVVTSIVAQNTLGVQHIHNLNHQW
NCTC8325 MIKPKIALTIAGTDPTGGAGVMADLKSFHSCGVYGMGVVTSIVAQNTLGVQHIHNLNHQW
Newman MIKPKIALTIAGTDPTGGAGVMADLKSFHSCGVYGMGVVTSIVAQNTLGVQHIHNLNHQW
USA300_FPR3757 MIKPKIALTIAGTDPTGGAGVMADLKSFHSCGVYGMGVVTSIVAQNTLGVQHIHNLNHQW
************************************************************
COL VDEQLDSVFNDTLPHAIKTGMIATADTMETIRHYLMQHESIPYVIDPVMLAKSGDSLMDN
N315 VDEQLDSVFNDTLPHAIKTGMIATADTMETIRHYLMQHESIPYVIDPVMLAKSGDSLMDN
NCTC8325 VDEQLDSVFNDTLPHAIKTGMIATADTMETIRHYLMQHESIPYVIDPVMLAKSGDSLMDN
Newman VDEQLDSVFNDTLPHAIKTGMIATADTMETIRHYLMQHESIPYVIDPVMLAKSGDSLMDN
USA300_FPR3757 VDEQLDSVFNDTLPHAIKTGMIATADTMETIRHYLMQHESIPYVIDPVMLAKSGDSLMDN
************************************************************
COL DTKQNLQHTLLPLADVVTPNLPEAEEITGLTIDSEEKIMQAGRIFINEIGSKGVIIKGGH
N315 DTKQNLQHTLLPLADVVTPNLPEAEEITGLTIDSEEKIMQAGRIFINEIGSKGIIIKGGH
NCTC8325 DTKQNLQHTLLPLADVVTPNLPEAEEITGLTIDSEEKIMQAGRIFINEIGSKGVIIKGGH
Newman DTKQNLQHTLLPLADVVTPNLPEAEEITGLTIDSEEKIMQAGRIFINEIGSKGVIIKGGH
USA300_FPR3757 DTKQNLQHTLLPLADVVTPNLPEAEEITGLTIDSEEKIMQAGRIFINEIGSKGVIIKGGH
*****************************************************:******
COL SNDTDIAKDYLFTNEGVQTFENERFKTKHTHGTGCTFSAVITAELAKGRPLFEAVHKAKK
N315 SNDTDIAKDYLFTNEGVQTFENERFKTKHTHGTGCTFSAVITAELAKGRPLFEAVHKAKK
NCTC8325 SNDTDIAKDYLFTNEGVQTFENERFKTKHTHGTGCTFSAVITAELAKGRPLFEAVHKAKK
Newman SNDTDIAKDYLFTNEGVQTFENERFKTKHTHGTGCTFSAVITAELAKGRPLFEAVHKAKK
USA300_FPR3757 SNDTDIAKDYLFTNEGVQTFENERFKTKHTHGTGCTFSAVITAELAKGRPLFEAVHKAKK
************************************************************
COL FISMSIQYTPEIGRGRGPVNHFAYLKKEGLDDELSK
N315 FISMSIQYTPEIGRGRGPVNHFAYLKKEGLDDELSK
NCTC8325 FISMSIQYTPEIGRGRGPVNHFAYLKKEGLDDELSK
Newman FISMSIQYTPEIGRGRGPVNHFAYLKKEGLDDELSK
USA300_FPR3757 FISMSIQYTPEIGRGRGPVNHFAYLKKEGLDDELSK
************************************