PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005009000
• symbol^?: eap/map
• synonym:
• description^?: MAP domain-containing protein

  descriptions from strain specific annotations:

  • MAP domain-containing protein
  • MHC class II analog protein
  • map protein, programmed frameshift
  • protein map
  • 65 kDa membrane protein
  • cell surface protein MapW2, programmed frameshift
  • major histocompatibility complex class II analog protein, Map
  • map-ND2C protein
  • MHC class II analog (pseudogene)
  • pseudogene
  • truncated cell surface protein map-w
• strand^?: -
• coordinates^?: 5188349..5190762
• synteny block^?: BlockID0038900
• occurrence^?: in 45% of 33 strains

⊟Orthologs

COL:
SACOL2002 (map)
N315:
SA1751
NCTC8325:
SAOUHSC_02161
Newman:
NWMN_1872 (map)
USA300_FPR3757:
SAUSA300_1917 (map)
04-02981:
—
08BA02176:
—
11819-97:
MS7_1973
6850:
—
71193:
—
ECT-R 2:
ECTR2_1810
ED133:
—
ED98:
—
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
SAA6008_01958 (map)
JKD6159:
SAA6159_01869
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS1861
Mu3:
—
Mu50:
—
MW2:
MW1880
RF122:
—
ST398:
—
T0131:
SAT0131_02070
TCH60:
—
TW20:
SATW20_19310 (mapW)
USA300_TCH1516:
USA300HOU_1942 (mapW2)
VC40:
SAVC_08955

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MKFKSLITTTLALGVLASTGANFNNNEASAAAKPLDKSSSSLHHGYSKVHVPYAITVNGT
  N315            MKFKSLITTTLALGVIASTGANFNTNEASAAAKPLDKSSSTLHHGHSNIQIPYTITVNGT
  NCTC8325        MKFKSLITTTLALGVLASTGANFNNNEASAAAKPLDKSSSSLHHGYSKVHVPYAITVNGT
  Newman          MKFKSLITTTLALGVLASTGANFNNNEASAAAKPLDKSSSSLHHGYSKVHVPYAITVNGT
                  ***************:********.***************:****:*::::**:******
  
  COL             SQNILSSLTFNKNQNISYKDLEDRVKSVLKSDRGISDIDLRLSKQAKYTVYFKNGTKKVI
  N315            SQNILSSLTFNKNQNISYKDIENKVKSVLYFNRGISDIDLRLSKQAEYTVHFKNGTKRVI
  NCTC8325        SQNILSSLTFNKNQNISYKDLEDRVKSVLKSDRGISDIDLRLSKQAKYTVYFKNGTKKVI
  Newman          SQNILSSLTFNKNQNISYKDLEDRVKSVLKSDRGISDIDLRLSKQAKYTVYFKNGTKKVI
                  ********************:*::*****  :**************:***:******:**
  
  COL             DLKAGIYTADLINTSEIKAININVDTKKQVEDKKKDKANYQVPYTITVNGTSQNILSNLT
  N315            DLKSGIYTADLINTSDIKAISVNVDTKKQPKDKA--KANVQVPYTITVNGTSQNILSNLT
  NCTC8325        DLKAGIYTADLINTSEIKAININVDTKKQVEDKKKDKANYQVPYTITVNGTSQNILSNLT
  Newman          DLKAGIYTADLINTSEIKAININVDTKKQVEDKKKDKANYQVPYTITVNGTSQNILSNLT
                  ***:***********:****.:******* :**   *** ********************
  
  COL             FNKNQNISYKDLEDKVKSVLESNRGITDVDLRLSKQAKYTVNFKNGTKKVIDLKSGIYTA
  N315            FNKNQNISYKDLEGKVKSVLESNRGITDVDLRLSKQAKYTVNFKNGTKKVIDLKSGIYTA
  NCTC8325        FNKNQNISYKDLEDKVKSVLESNRGITDVDLRLSKQAKYTVNFKNGTKKVIDLKSGIYTA
  Newman          FNKNQNISYKDLEDKVKSVLESNRGITDVDLRLSKQAKYTVNFKNGTKKVIDLKSGIYTA
                  *************.**********************************************
  
  COL             NLINSSDIKSININVDTKKHIENKAKRNYQVPYSINLNGTSTNILSNLSFSNKPWTNYKN
  N315            NLINSSDIKSININVDTKKHIENKAKRNYQVPYSINLNGTSTNILSNLSFSNKPWTNYKN
  NCTC8325        NLINSSDIKSININVDTKKHIENKAKRNYQVPYSINLNGTSTNILSNLSFSNKPWTNYKN
  Newman          NLINSSDIKSININVDTKKHIENKAKRNYQVPYSINLNGTSTNILSNLSFSNKPWTNYKN
                  ************************************************************
  
  COL             LTSQIKSVLKHDRGISEQDLKYAKKAYYTVYFKNGGKRILQLNSKNYTANLVHAKDVKRI
  N315            LTSQIKSVLKHDRGISEQDLKYAKKAYYTVYFKNGGKRILQLNSKNYTANLVHAKDVKRI
  NCTC8325        LTSQIKSVLKHDRGISEQDLKYAKKAYYTVYFKNGGKRILQLNSKNYTANLVHAKDVKRI
  Newman          LTSQIKSVLKHDRGISEQDLKYAKKAYYTVYFKNGGKRILQLNSKNYTANLVHAKDVKRI
                  ************************************************************
  
  COL             EITVKTGTKAKADRYVPYTIAVNGTSTPILSDLKFTGDPRVGYKDISKKVKSVLKHDRGI
  N315            EITVKTGTKAKADR----------------------------------------------
  NCTC8325        EITVKTGTKAKADRYVPYTIAVNGTSTPILSDLKFTGDPRVGYKDISKKVKSVLKHDRGI
  Newman          EITVKTGTKAKADRYVPYTIAVNGTSTPILSDLKFTGDPRVGYKDISKKVKSVLKHDRGI
                  **************                                              
  
  COL             GERELKYAKKATYTVHFKNGTKKVININSNISQLNLLYVQDIKKIDIDVKTGTKAKADSY
  N315            -----------------------------------------------------------Y
  NCTC8325        GERELKYAKKATYTVHFKNGTKKVININSNISQLNLLYVQDIKKIDIDVKTGTKAKADSY
  Newman          GERELKYAKKATYTVHFKNGTKKVININSNISQLNLLYVQDIKKIDIDVKTGTKAKADSY
                                                                             *
  
  COL             VPYTIAVNGTSTPILSKLKISNKQLISYKYLNDKVKSVLKSERGISDLDLKFAKQAKYTV
  N315            VPYTIAVNGTSTPILSKLKISNKQLISYKYLNDKVKSVLKSERGISDLDLKFAKQAKYTV
  NCTC8325        VPYTIAVNGTSTPILSKLKISNKQLISYKYLNDKVKSVLKSERGISDLDLKFAKQAKYTV
  Newman          VPYTIAVNGTSTPILSKLKISNKQLISYKYLNDKVKSVLKSERGISDLDLKFAKQAKYTV
                  ************************************************************
  
  COL             YFKNGKKQVVNLKSDIFTPNLFSAKDIKKIDIDVKQYTKSKKNNKSNNVKFPVTINKFEN
  N315            YFKNGKKQVVNLKSDIFTPNLFSAKDIKKIDIDVKQYTKSKKK-----------------
  NCTC8325        YFKNGKKQVVNLKSDIFTPNLFSAKDIKKIDIDVKQYTKSKKNK----------------
  Newman          YFKNGKKQVVNLKSDIFTPNLFSAKDIKKIDIDVKQYTKSKKNK----------------
                  ******************************************:                 
  
  COL             IVSNEFVFYNASKITINDLSIKLKSAMANDQGITKHDIGLAERAVYKVYFKNGSSKYVDL
  N315            ------------------------------------------------------------
  NCTC8325        ------------------------------------------------------------
  Newman          ------------------------------------------------------------
                                                                              
  
  COL             KTEYKDERVFKATDIKKVDIELKF
  N315            ------------------------
  NCTC8325        ------------------------
  Newman          ------------------------