PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN004791000
• symbol^?: cspR
• synonym:
• description^?: tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL

  descriptions from strain specific annotations:

  • tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL
  • RNA methyltransferase
  • RNA methyltransferase, TrmH family
  • SpoU rRNA methylase family protein
  • rRNA methylase-like protein
  • tRNA (cytosine34-2-O-)-methyltransferase
  • 23S rRNA methyltransferase
  • RNA methyltransferase, TrmH family, group 2
  • rRNA methylase
  • TrmH family RNA methyltransferase
• strand^?: -
• coordinates^?: 4998607..4999077
• synteny block^?: BlockID0037230
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1913
N315:
SA1672
NCTC8325:
SAOUHSC_01988
Newman:
NWMN_1747
USA300_FPR3757:
SAUSA300_1805
04-02981:
SA2981_1811
08BA02176:
C248_1899
11819-97:
MS7_1860
6850:
RSAU_001714
71193:
ST398NM01_1921
ECT-R 2:
ECTR2_1697
ED133:
SAOV_1852
ED98:
SAAV_1874
HO 5096 0412:
SAEMRSA15_17600
JH1:
SaurJH1_1943
JH9:
SaurJH9_1909
JKD6008:
SAA6008_01812
JKD6159:
SAA6159_01784
LGA251:
SARLGA251_17380
M013:
M013TW_1861
MRSA252:
SAR1946
MSHR1132:
SAMSHR1132_17010
MSSA476:
SAS1778
Mu3:
SAHV_1840
Mu50:
SAV1855
MW2:
MW1796
RF122:
SAB1789c
ST398:
SAPIG1921
T0131:
SAT0131_01975
TCH60:
HMPREF0772_11289
TW20:
SATW20_18490
USA300_TCH1516:
USA300HOU_1850
VC40:
SAVC_08525

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MTNHIVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITY
  N315            MTNHIVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITY
  NCTC8325        MTNHIVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITY
  Newman          MTNHIVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITY
  USA300_FPR3757  MTNHIVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITY
                  ************************************************************
  
  COL             HDSIEAFFEVTNGEYYLLTKFGKKTYSDFDFSNHDKDFYFIFGKETTGLPDWVKEKYQDT
  N315            HDSIEAFFEATNGEYYLLTKFGKKTYSDFDFSNHDKDFYFIFGKETTGLPDWVKEKYQDT
  NCTC8325        HDSIEAFFEVTNGEYYLLTKFGKKTYSDFDFSNHDKDFYFIFGKETTGLPDWVKEKYQDT
  Newman          HDSIEAFFEVTNGEYYLLTKFGKKTYSDFDFSNHDKDFYFIFGKETTGLPDWVKEKYQDT
  USA300_FPR3757  HDSIEAFFEVTNGEYYLLTKFGKKTYSDFDFSNHDKDFYFIFGKETTGLPDWVKEKYQDT
                  *********.**************************************************
  
  COL             ALRIPMSEHIRSLNLSNTAALLIYEALRQQDFPGLN
  N315            ALRIPMSEHIRSLNLSNTAALLIYEALRQQDFPGLN
  NCTC8325        ALRIPMSEHIRSLNLSNTAALLIYEALRQQDFPGLN
  Newman          ALRIPMSEHIRSLNLSNTAALLIYEALRQQDFPGLN
  USA300_FPR3757  ALRIPMSEHIRSLNLSNTAALLIYEALRQQDFPGLN
                  ************************************