PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN004785000
• symbol^?: —
• synonym:
• description^?: staphylococcal membrane protein, putative

  descriptions from strain specific annotations:

  • staphylococcal membrane protein, putative
  • membrane protein
• strand^?: -
• coordinates^?: 4995850..4996267
• synteny block^?: BlockID0037170
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1909
N315:
SA1670
NCTC8325:
SAOUHSC_01984
Newman:
NWMN_1744
USA300_FPR3757:
SAUSA300_1802
04-02981:
SA2981_1808
08BA02176:
C248_1895
11819-97:
MS7_1857
6850:
RSAU_001711
71193:
ST398NM01_1918
ECT-R 2:
ECTR2_1694
ED133:
SAOV_1849
ED98:
SAAV_1871
HO 5096 0412:
SAEMRSA15_17570
JH1:
SaurJH1_1940
JH9:
SaurJH9_1906
JKD6008:
SAA6008_01809
JKD6159:
SAA6159_01780
LGA251:
SARLGA251_17350
M013:
M013TW_1858
MRSA252:
SAR1943
MSHR1132:
SAMSHR1132_16980
MSSA476:
SAS1773
Mu3:
SAHV_1837
Mu50:
SAV1852
MW2:
MW1793
RF122:
SAB1785c
ST398:
SAPIG1918
T0131:
SAT0131_01972
TCH60:
HMPREF0772_11292
TW20:
SATW20_18460
USA300_TCH1516:
USA300HOU_1846
VC40:
SAVC_08505

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MLGKYWIQLLIATVIISLISIKAFPLAIGALYLPVIFKVIKLQLNLSKGLIDDVNAQTFI
  N315            MLGKYWIQLLIATVIISLISIKAFPLAIGALYLPVIFKVIKLQLNLSKGLIDDVNAQTFI
  NCTC8325        MLGKYWIQLLIATVIISLISIKAFPLAIGALYLPVIFKVIKLQLNLSKGLIDDVNAQTFI
  Newman          MLGKYWIQLLIATVIISLISIKAFPLAIGALYLPVIFKVIKLQLNLSKGLIDDVNAQTFI
  USA300_FPR3757  MLGKYWIQLLIATVIISLISIKAFPLAIGALYLPVIFKVIKLQLNLSKGLIDDVNAQTFI
                  ************************************************************
  
  COL             KSNQSGIVISVICCLLITAILYYTLDGFYASLTGVLGTLVALNPYTTIVSAVLYILTAIA
  N315            KSNQSGIVISVICCLLITGILYYTLDGFYASLTGVLGTLVALNPYTTIVSAVLYILTAIA
  NCTC8325        KSNQSGIVISVICCLLITAILYYTLDGFYASLTGVLGTLVALNPYTTIVSAVLYILTAIA
  Newman          KSNQSGIVISVICCLLITAILYYTLDGFYASLTGVLGTLVALNPYTTIVSAVLYILTAIA
  USA300_FPR3757  KSNQSGIVISVICCLLITAILYYTLDGFYASLTGVLGTLVALNPYTTIVSAVLYILTAIA
                  ******************.*****************************************
  
  COL             TVEATKTKYRN
  N315            TVEATKTKYRN
  NCTC8325        TVEATKTKYRN
  Newman          TVEATKTKYRN
  USA300_FPR3757  TVEATKTKYRN
                  ***********