PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN004508000
• symbol^?: rppH
• synonym:
• description^?: nucleoside triphosphatase YtkD

  descriptions from strain specific annotations:

  • nucleoside triphosphatase YtkD
  • MutT/nudix family protein
  • Low G+C gram positive nudix hydrolase YtkD
  • MutT/NUDIX hydrolase family protein
  • NUDIX family hydrolase
  • phosphohydrolase
  • putative hydrolase
• strand^?: -
• coordinates^?: 4738154..4738627
• synteny block^?: BlockID0034990
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1841
N315:
SA1612
NCTC8325:
SAOUHSC_01913
Newman:
NWMN_1684
USA300_FPR3757:
SAUSA300_1734
04-02981:
SA2981_1749 (ytkD)
08BA02176:
C248_1838
11819-97:
MS7_1792 (ytkD)
6850:
RSAU_001646
71193:
ST398NM01_1841
ECT-R 2:
ECTR2_1628 (ytkD)
ED133:
SAOV_1774
ED98:
SAAV_1803
HO 5096 0412:
SAEMRSA15_17010
JH1:
SaurJH1_1880
JH9:
SaurJH9_1844
JKD6008:
SAA6008_01769
JKD6159:
SAA6159_01711
LGA251:
SARLGA251_16770
M013:
M013TW_1803
MRSA252:
SAR1874
MSHR1132:
SAMSHR1132_16380
MSSA476:
SAS1714
Mu3:
SAHV_1779
Mu50:
SAV1794
MW2:
MW1732
RF122:
SAB1648c
ST398:
SAPIG1841 (ytkD)
T0131:
SAT0131_01909
TCH60:
HMPREF0772_11363 (ytkD)
TW20:
SATW20_17830
USA300_TCH1516:
USA300HOU_1781
VC40:
SAVC_08180

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MRVKFRDKDNRQVNLTFKKDNEIADGNHVLAIPTFKNQLLFTKHNLRGIEFPGGKRERGE
  N315            MRVKFRDKDNRQVNLTFKKDNEIADGNHVLAIPTFKNQLLFTKHNLRGIEFPGGKRERGE
  NCTC8325        --MKFRDKDNRQVNLTFKKDNEIADGNHVLAIPTFKNQLLFTKHNLRGIEFPGGKRERGE
  Newman          MRVKFRDKDNRQVNLTFKKDNEIADGNHVLAIPTFKNQLLFTKHNLRGIEFPGGKRERGE
  USA300_FPR3757  MRVKFRDKDNRQVNLTFKKDNEIADGNHVLAIPTFKNQLLFTKHNLRGIEFPGGKRERGE
                    :*********************************************************
  
  COL             SSAEAVTRELYEETGAKVKNIYYIAQYTIETHDQTDFVKDVYFIEVESLVSKNDYLETAG
  N315            SSAEAVTRELYEETGAKVKNIHYIAQYTIETHDQTDFVKDVYFIEVESLVSKNDYLETAG
  NCTC8325        SSAEAVTRELYEETGAKVKNIYYIAQYTIETHDQTDFVKDVYFIEVESLVSKNDYLETAG
  Newman          SSAEAVTRELYEETGAKVKNIYYIAQYTIETHDQTDFVKDVYFIEVESLVSKNDYLETAG
  USA300_FPR3757  SSAEAVTRELYEETGAKVKNIYYIAQYTIETHDQTDFVKDVYFIEVESLVSKNDYLETAG
                  *********************:**************************************
  
  COL             PVLFNCINDIELAQRSFLLQDSTILKCVERVQSLGFYQT
  N315            PVLFNCINDIELAQRSFLLQDSTILKCVERVQSLGFYQT
  NCTC8325        PVLFNCINDIELAQRSFLLQDSTILKCVERVQSLGFYQT
  Newman          PVLFNCINDIELAQRSFLLQDSTILKCVERVQSLGFYQT
  USA300_FPR3757  PVLFNCINDIELAQRSFLLQDSTILKCVERVQSLGFYQT
                  ***************************************