PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN004349000
• symbol^?: —
• synonym:
• description^?: NAD-dependent malic enzyme 4

  descriptions from strain specific annotations:

  • NAD-dependent malic enzyme 4
  • NADP-dependent malic enzyme
  • NADP-dependent malic enzyme, malate dehydrogenase
  • NADP-dependent malic enzyme, putative
  • putative NADP-dependent malic enzyme
  • malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+))
  • malate dehydrogenase-like protein
  • malic enzyme, NAD binding domain protein
  • NAD-dependent malic enzyme
  • NAD-dependent malic enzyme (NAD-ME)
  • NADP-dependent malate dehydrogenase (oxaloacetate-decarboxylating)
• strand^?: -
• coordinates^?: 4588996..4589964
• synteny block^?: BlockID0033540
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1749
N315:
SA1524
NCTC8325:
SAOUHSC_01810
Newman:
NWMN_1596 (maeB)
USA300_FPR3757:
SAUSA300_1648
04-02981:
SA2981_1660
08BA02176:
C248_1743
11819-97:
MS7_1708
6850:
RSAU_001559
71193:
ST398NM01_1755
ECT-R 2:
ECTR2_1541
ED133:
SAOV_1689
ED98:
SAAV_1711
HO 5096 0412:
SAEMRSA15_16110
JH1:
SaurJH1_1792
JH9:
SaurJH9_1758
JKD6008:
SAA6008_01670 (maeB)
JKD6159:
SAA6159_01625 (maeB)
LGA251:
SARLGA251_15930
M013:
M013TW_1714
MRSA252:
SAR1780
MSHR1132:
SAMSHR1132_15520
MSSA476:
SAS1629
Mu3:
SAHV_1688
Mu50:
SAV1702
MW2:
MW1645
RF122:
SAB1560c
ST398:
SAPIG1755
T0131:
SAT0131_01805 (mnhE)
TCH60:
HMPREF0772_11450 (maeB)
TW20:
SATW20_16930
USA300_TCH1516:
USA300HOU_1688
VC40:
SAVC_07720

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MSLRDEALEMHKRNQGKLEVKPNVKVTNKEELSLAYSPGVAEPCKDIYEDKRKVYDYTIK
  N315            MSLRDEALEMHKRNQGKLEVKPNVKVTNKEELSLAYSPGVAEPCKDIYEDKRKVYDYTIK
  NCTC8325        MSLRDEALEMHKRNQGKLEVKPNVKVTNKEELSLAYSPGVAEPCKDIYEDKRKVYDYTIK
  Newman          MSLRDEALEMHKRNQGKLEVKPNVKVTNKEELSLAYSPGVAEPCKDIYEDKRKVYDYTIK
  USA300_FPR3757  MSLRDEALEMHKRNQGKLEVKPNVKVTNKEELSLAYSPGVAEPCKDIYEDKRKVYDYTIK
                  ************************************************************
  
  COL             GNTVAVITDGTAVLGLGNIGPEASIPVMEGKAVLFKSFAGINGVPIALNTTDTEEIIKTV
  N315            GNTVAVITDGTAVLGLGNIGPEASIPVMEGKAVLFKSFAGINGVPIALNTTDTEEIIKTV
  NCTC8325        GNTVAVITDGTAVLGLGNIGPEASIPVMEGKAVLFKSFAGINGVPIALNTTDTEEIIKTV
  Newman          GNTVAVITDGTAVLGLGNIGPEASIPVMEGKAVLFKSFAGINGVPIALNTTDTEEIIKTV
  USA300_FPR3757  GNTVAVITDGTAVLGLGNIGPEASIPVMEGKAVLFKSFAGINGVPIALNTTDTEEIIKTV
                  ************************************************************
  
  COL             KLLEPNYGGINLEDISAPRCFEIEERLKKETNIPVFHDDQHGTAIVTLAGLVNALRVVNK
  N315            KLLEPNYGGINLEDISAPRCFEIEERLKKETNIPVFHDDQHGTAIVTMAGLVNALRVVNK
  NCTC8325        KLLEPNYGGINLEDISAPRCFEIEERLKKETNIPVFHDDQHGTAIVTLAGLVNALRVVNK
  Newman          KLLEPNYGGINLEDISAPRCFEIEERLKKETNIPVFHDDQHGTAIVTLAGLVNALRVVNK
  USA300_FPR3757  KLLEPNYGGINLEDISAPRCFEIEERLKKETNIPVFHDDQHGTAIVTLAGLVNALRVVNK
                  ***********************************************:************
  
  COL             DIAKIKVVLNGAGAAGIAIVKLLYAYGVRNMVMCDSRGAIFEGRSYGMNPTKDVVAKWTN
  N315            DIAKIKVVLNGAGAAGIAIVKLLYAYGVRNMVMCDSRGAIFEGRSYGMNPTKDVVAKWTN
  NCTC8325        DIAKIKVVLNGAGAAGIAIVKLLYAYGVRNMVMCDSRGAIFEGRSYGMNPTKDVVAKWTN
  Newman          DIAKIKVVLNGAGAAGIAIVKLLYAYGVRNMVMCDSRGAIFEGRSYGMNPTKDVVAKWTN
  USA300_FPR3757  DIAKIKVVLNGAGAAGIAIVKLLYAYGVRNMVMCDSRGAIFEGRSYGMNPTKDVVAKWTN
                  ************************************************************
  
  COL             KDKIEGSLEEVVKDADVFIGVSVANALSQDMVKSMADNPIIFAMANPNPEIIPDDAKAAG
  N315            KDKIEGSLEEVVKDADVFIGVSVANALSQDMVKSMADNPIIFAMANPNPEIIPDDAKAAG
  NCTC8325        KDKIEGSLEEVVKDADVFIGVSVANALSQDMVKSMADNPIIFAMANPNPEIIPDDAKAAG
  Newman          KDKIEGSLEEVVKDADVFIGVSVANALSQDMVKSMADNPIIFAMANPNPEIIPDDAKAAG
  USA300_FPR3757  KDKIEGSLEEVVKDADVFIGVSVANALSQDMVKSMADNPIIFAMANPNPEIIPDDAKAAG
                  ************************************************************
  
  COL             ARVVGTGRSDYPNQINNVLAFPGIFRGALEVEATHINEEMKKAAVEAIADLIDSSELNED
  N315            ARVVGTGRSDYPNQINNVLAFPGIFRGALEVEATHINEEMKKAAVEAIADLIDSSELNED
  NCTC8325        ARVVGTGRSDYPNQINNVLAFPGIFRGALEVEATHINEEMKKAAVEAIADLIDSSELNED
  Newman          ARVVGTGRSDYPNQINNVLAFPGIFRGALEVEATHINEEMKKAAVEAIADLIDSSELNED
  USA300_FPR3757  ARVVGTGRSDYPNQINNVLAFPGIFRGALEVEATHINEEMKKAAVEAIADLIDSSELNED
                  ************************************************************
  
  COL             YCIPGPFDKRVAPSVARNVAKAAMESGVARIEVDPQDVYDKTMKLTDLQ
  N315            YCIPGPFDKRVAPSVARNVAKAAMESGVARIEVDPQDVYDKTMKLTDLQ
  NCTC8325        YCIPGPFDKRVAPSVARNVAKAAMESGVARIEVDPQDVYDKTMKLTDLQ
  Newman          YCIPGPFDKRVAPSVARNVAKAAMESGVARIEVDPQDVYDKTMKLTDLQ
  USA300_FPR3757  YCIPGPFDKRVAPSVARNVAKAAMESGVARIEVDPQDVYDKTMKLTDLQ
                  *************************************************