PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003344000
• symbol^?: ctaM
• synonym:
• description^?: membrane protein

  descriptions from strain specific annotations:

  • membrane protein
  • DUF420 domain-containing protein
  • Putative Heme biosynthesis related protein
  • membrane spanning protein
  • Protein of hypothetical function
• strand^?: +
• coordinates^?: 3713183..3713653
• synteny block^?: BlockID0024280
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1126
N315:
SA0966
NCTC8325:
SAOUHSC_01067
Newman:
NWMN_0982
USA300_FPR3757:
SAUSA300_1017
04-02981:
SA2981_1074
08BA02176:
C248_1144
11819-97:
MS7_1074
6850:
RSAU_001002
71193:
ST398NM01_1114
ECT-R 2:
ECTR2_972
ED133:
SAOV_1059
ED98:
SAAV_1083
HO 5096 0412:
SAEMRSA15_09470
JH1:
SaurJH1_1199
JH9:
SaurJH9_1177
JKD6008:
SAA6008_01072
JKD6159:
SAA6159_00972
LGA251:
SARLGA251_10300
M013:
M013TW_1049
MRSA252:
SAR1091
MSHR1132:
SAMSHR1132_09640
MSSA476:
SAS1052
Mu3:
SAHV_1109
Mu50:
SAV1117
MW2:
MW1000
RF122:
SAB0982
ST398:
SAPIG1114
T0131:
SAT0131_01156 (lacR)
TCH60:
HMPREF0772_12115
TW20:
SATW20_11120
USA300_TCH1516:
USA300HOU_1055
VC40:
SAVC_04750

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MGVPILPTISTTCIVISAILIAIGWRLIWKREINKHKNVMLAAAVFALTFFLIYASRTIF
  N315            MGVPILPTISTTCIVISAILIAIGWRLIWKREINKHKNVMLAAAVFALTFFLIYASRTIF
  NCTC8325        MGVPILPTISTTCIVISAILIAIGWRLIWKREINKHKNVMLAAAVFALTFFLIYASRTIF
  Newman          MGVPILPTISTTCIVISAILIAIGWRLIWKREINKHKNVMLAAAVFALTFFLIYASRTIF
  USA300_FPR3757  MGVPILPTISTTCIVISAILIAIGWRLIWKREINKHKNVMLAAAVFALTFFLIYASRTIF
                  ************************************************************
  
  COL             IGNTAFGGPASIKKYYTIFLFFHINLATIGGILGLVQIITAFKDKYNVHRKFGPFASVIW
  N315            IGNTAFGGPASIKKYYTIFLFFHINLATIGGILGLVQIITAFKDKYNVHRKFGPFASVIW
  NCTC8325        IGNTAFGGPASIKKYYTIFLFFHINLATIGGILGLVQIITAFKDKYNVHRKFGPFASVIW
  Newman          IGNTAFGGPASIKKYYTIFLFFHINLATIGGILGLVQIITAFKDKYNVHRKFGPFASVIW
  USA300_FPR3757  IGNTAFGGPASIKKYYTIFLFFHINLATIGGILGLVQIITAFKDKYNVHRKFGPFASVIW
                  ************************************************************
  
  COL             FCTAITGVAVYLLLYVLYPGGETTSLIKATFGH
  N315            FCTAITGVAVYLLLYVLYPGGETTSLIKATFGH
  NCTC8325        FCTAITGVAVYLLLYVLYPGGETTSLIKATFGH
  Newman          FCTAITGVAVYLLLYVLYPGGETTSLIKATFGH
  USA300_FPR3757  FCTAITGVAVYLLLYVLYPGGETTSLIKATFGH
                  *********************************