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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary[edit | edit source]

pan ID^?: SAUPAN002770000
symbol^?: —
synonym:
description^?: conserved cytoplasmic protein
strand^?: -
coordinates^?: 3243267..3243569
synteny block^?: BlockID0019730
occurrence^?: in 58% of 33 strains

⊟Orthologs[edit | edit source]

COL:

N315:

NCTC8325:

Newman:

USA300_FPR3757:

04-02981:

SA2981_0761

08BA02176:

—

11819-97:

MS7_0833

6850:

RSAU_000760

71193:

—

ECT-R 2:

ECTR2_733

ED133:

—

ED98:

SAAV_0751

HO 5096 0412:

—

JH1:

SaurJH1_0823

JH9:

SaurJH9_0807

JKD6008:

SAA6008_00797

JKD6159:

—

LGA251:

—

M013:

—

MRSA252:

—

MSHR1132:

—

MSSA476:

—

Mu3:

SAHV_0803

Mu50:

SAV0807

MW2:

—

RF122:

—

ST398:

—

T0131:

SAT0131_00876

TCH60:

—

TW20:

SATW20_08570

USA300_TCH1516:

USA300HOU_0813

VC40:

SAVC_03555

⊟Genome Viewer[edit | edit source]

⊟Alignments[edit | edit source]

alignment of orthologues:
CLUSTAL format alignment by MAFFT L-INS-i (v7.307)

COL             MNNEELEMRLLLMKQSIEQLQEELAPNLKTRDLVLLRYMYSYKEINMLDSYLFQLATNKE
N315            -------MRLLLMKQSIEQLQEELAPNLKTRDLVLLRYMYSYKEINMLDSYLFQLATNKE
NCTC8325        MNNEELEMRLLLMKQSIEQLQEELAPNLKTRDLVLLRYMYSYKEINMLDSYLFQLATNKE
Newman          MNNEELEMRLLLMKQSIEQLQEELAPNLKTRDLVLLRYMYSYKEINMLDSYLFQLATNKE
USA300_FPR3757  MNNEELEMRLLLMKQSIEQLQEELAPNLKTRDLVLLRYMYSYKEINMLDSYLFQLATNKE
                       *****************************************************

COL             QITKKQFKTKLENIREVPEIPIRQVNDILEGYKNSELYVELINSILK
N315            QITKKQFKTKLENIREVPEIPIRQVNDILEGYKNSELYVELINSILK
NCTC8325        QITKKQFKTKLENIREVPEIPIRQVNDILEGYKNSELYVELINSILK
Newman          QITKKQFKTKLENIREVPEIPIRQVNDILEGYKNSELYVELINSILK
USA300_FPR3757  QITKKQFKTKLENIREVPEIPIRQVNDILEGYKNSELYVELINSILK
                ***********************************************

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