⊟Summary[edit | edit source]
- pan ID?: SAUPAN002610000
- symbol?: opuBB
- synonym:
- description?: ABC transporter permease
- ABC transporter permease
- osmoprotectant ABC transporter permease
- ABC transporter permease/substrate-binding protein
- amino acid ABC transporter permease
- osmoprotectant ABC transporter, permease protein, putative
- ABC transporter permease protein
- ABC-type proline/glycine betaine transport systems, permease component
- choline ABC transporter permease
- choline transporter
- choline transporter, permease protein
- glycine/betaine ABC transporter permease
- glycine betaine/carnitine/choline ABC superfamily ATP binding cassette transporter, membrane protein
- glycine betaine/carnitine/choline ABC transporter membrane protein
- glycine betaine/carnitine/choline ATP-binding ABC transport protein
- glycine betaine ABC transporter substrate-binding protein
- glycine betaine transport system permease
- osmoprotectant ABC transporter, permease protein
- OsmotiCALL import_20_25_26_pangenomey activated L-carnitine/choline ABC transporter, permease protein OpuCB
- substrate binding domain of ABC-type glycine betaine transport system family protein
- substrate-binding region of ABC-type glycine betaine transport system
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3121348..3122862
- synteny block?: BlockID0018460
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0700
08BA02176:
C248_0808
11819-97:
MS7_0774
6850:
RSAU_000697
71193:
ST398NM01_0800
ECT-R 2:
ECTR2_673
ED133:
SAOV_0757 (opuBB)
ED98:
SAAV_0684
HO 5096 0412:
SAEMRSA15_06490
JH1:
SaurJH1_0763
JH9:
SaurJH9_0746
JKD6008:
SAA6008_00738
JKD6159:
SAA6159_00677
LGA251:
SARLGA251_06560
M013:
M013TW_0709
MRSA252:
SAR0776
MSHR1132:
SAMSHR1132_06680
MSSA476:
SAS0688
Mu3:
SAHV_0720
Mu50:
SAV0723
MW2:
MW0685
RF122:
SAB0672
ST398:
SAPIG0800
T0131:
SAT0131_00792
TCH60:
HMPREF0772_12464 (opuBB)
TW20:
SATW20_07980
USA300_TCH1516:
USA300HOU_0746
VC40:
SAVC_03245
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MTNFFDILSERKGQLFSTMIEHIQISFIALLIATAIAVPLGILLTKTKTISEIVMNIAAI
N315 MTNFFDILSERKGQLFSTMIEHIQISFIALLIATAIAVPLGILLTKTKTISEIVMNIAAI
NCTC8325 MTNFFDILSERKGQLFSTMIEHIQISFIALLIATAIAVPLGILLTKTKTISEIVMNIAAI
Newman MTNFFDILSERKGQLFSTMIEHIQISFIALLIATAIAVPLGILLTKTKTISEIVMNIAAI
USA300_FPR3757 MTNFFDILSERKGQLFSTMIEHIQISFIALLIATAIAVPLGILLTKTKTISEIVMNIAAI
************************************************************
COL LQTIPSLALLGLMIPLFGIGRVPAIIALVVYALLPILRNTYTGIKEVDPSLIEAAKGIGM
N315 LQTIPSLALLGLMIPLFGIGRVPAIIALVVYALLPILRNTYTGIKEVDPSLIEAAKGIGM
NCTC8325 LQTIPSLALLGLMIPLFGIGRVPAIIALVVYALLPILRNTYTGIKEVDPSLIEAAKGIGM
Newman LQTIPSLALLGLMIPLFGIGRVPAIIALVVYALLPILRNTYTGIKEVDPSLIEAAKGIGM
USA300_FPR3757 LQTIPSLALLGLMIPLFGIGRVPAIIALVVYALLPILRNTYTGIKEVDPSLIEAAKGIGM
************************************************************
COL KPFRRLTKVELPIAMPVIMAGVRTAMVLIIGTATLAALIGAGGLGDLILLGIDRNNASLI
N315 KPFRRLTKVELPIAMPVIMAGVRTAMVLIIGTATLAALIGAGGLGDLILLGIDRNNASLI
NCTC8325 KPFRRLTKVELPIAMPVIMAGVRTAMVLIIGTATLAALIGAGGLGDLILLGIDRNNASLI
Newman KPFRRLTKVELPIAMPVIMAGVRTAMVLIIGTATLAALIGAGGLGDLILLGIDRNNASLI
USA300_FPR3757 KPFRRLTKVELPIAMPVIMAGVRTAMVLIIGTATLAALIGAGGLGDLILLGIDRNNASLI
************************************************************
COL LLGAIPAALLAIIFDLILRFMAKLSYKKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAG
N315 LLGAIPAALLAIIFDLILRFMAKLSYKKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAG
NCTC8325 LLGAIPAALLAIIFDLILRFMAKLSYKKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAG
Newman LLGAIPAALLAIIFDLILRFMAKLSYKKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAG
USA300_FPR3757 LLGAIPAALLAIIFDLILRFMAKLSYKKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAG
************************************************************
COL KLGSEPSIITNMYKILIEEETKNTVEVKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGEL
N315 KLGSEPSIITNMYKILIEEETKNTVEVKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGEL
NCTC8325 KLGSEPSIITNMYKILIEEETKNTVEVKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGEL
Newman KLGSEPSIITNMYKILIEEETKNTVEVKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGEL
USA300_FPR3757 KLGSEPSIITNMYKILIEEETKNTVEVKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGEL
************************************************************
COL TKEPLKSKEEKKVYEQAKQSLEKKYQMTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLN
N315 TKEPLKSKEEKKVYEQAKQSLEKKYQMTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLN
NCTC8325 TKEPLKSKEEKKVYEQAKQSLEKKYQMTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLN
Newman TKEPLKSKEEKKVYEQAKQSLEKKYQMTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLN
USA300_FPR3757 TKEPLKSKEEKKVYEQAKQSLEKKYQMTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLN
************************************************************
COL KVKDQLKPGFTLEFNDRPDGYKAVQKAYNLNLDNIRTMEPKLRYQAINKGNINLIDAYST
N315 KVKDQLKPGFTLEFNDRPDGYKAVQKAYNLNLDNIRTMEPKLRYQAINKGNINLIDAYST
NCTC8325 KVKDQLKPGFTLEFNDRPDGYKAVQKAYNLNLDNIRTMEPKLRYQAINKGNINLIDAYST
Newman KVKDQLKPGFTLEFNDRPDGYKAVQKAYNLNLDNIRTMEPKLRYQAINKGNINLIDAYST
USA300_FPR3757 KVKDQLKPGFTLEFNDRPDGYKAVQKAYNLNLDNIRTMEPKLRYQAINKGNINLIDAYST
************************************************************
COL DAELKQYDMVVLKDDKHVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNY
N315 DAELKQYDMVVLKDDKHVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNY
NCTC8325 DAELKQYDMVVLKDDKHVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNY
Newman DAELKQYDMVVLKDDKHVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNY
USA300_FPR3757 DAELKQYDMVVLKDDKHVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNY
************************************************************
COL KVTVKNEDPYTVAKDYLKAKGLIK
N315 KVTVKNEDPYTVAKDYLKAKGLIK
NCTC8325 KVTVKNEDPYTVAKDYLKAKGLIK
Newman KVTVKNEDPYTVAKDYLKAKGLIK
USA300_FPR3757 KVTVKNEDPYTVAKDYLKAKGLIK
************************