PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002142000
• symbol^?: lpl3
• synonym:
• description^?: tandem-type lipoprotein

  descriptions from strain specific annotations:

  • tandem-type lipoprotein
  • tandem lipoprotein
  • staphylococcal tandem lipoprotein
  • lipoprotein
  • Membrane lipoprotein
  • pseudogene
  • staphylococcus tandem lipoproteins family protein
  • Tandem lipoprotein within Pathogenicity island
• strand^?: +
• coordinates^?: 2644134..2645795
• synteny block^?: BlockID0014480
• occurrence^?: in 58% of 33 strains

⊟Orthologs

COL:
—
N315:
SA0403 (lpl7)
NCTC8325:
SAOUHSC_00402
Newman:
NWMN_0406 (lpl3nm)
USA300_FPR3757:
SAUSA300_0413
04-02981:
SA2981_0419 (lpl7)
08BA02176:
C248_0493
11819-97:
—
6850:
RSAU_000374
71193:
ST398NM01_0509
ECT-R 2:
ECTR2_378
ED133:
—
ED98:
SAAV_0386
HO 5096 0412:
—
JH1:
SaurJH1_0478
JH9:
SaurJH9_0466
JKD6008:
SAA6008_00441
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
SAHV_0441 (lpl7)
Mu50:
SAV0443 (lpl7)
MW2:
—
RF122:
—
ST398:
SAPIG0509
T0131:
SAT0131_00477 (acs)
TCH60:
—
TW20:
—
USA300_TCH1516:
USA300HOU_0441 (lpl7)
VC40:
SAVC_01810

⊟Genome Viewer

N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  N315            ----------MGYFKRVVLYIIVMVVSVFIIGCNKSSDTSEKPKEDSKETQIKKSFAKTL
  NCTC8325        MKYKTERREAMGYLKRFALYISVMILIFAIAGCGKGNET----KEDSKEEQIKKSFAKTL
  Newman          ---------MMGYLKRLVLYIVIMVMSVFIIGCDKSSDTAEKSKEDSKETQIKKSFAKTL
  USA300_FPR3757  ---------MMGYLKRLVLYIVIMVMSVFIIGCDKSSDTAEKSKEDSKETQIKKSFAKTL
                            ***:**..*** :*:: . * **.*..:*    ****** **********
  
  N315            DMYPIKNLEDLYDKEGYRDGEFKKGDKGMWTIYTDFAKSNKQGGLSNEGMVLYLDRNTRT
  NCTC8325        DMYPIKNLEDLYDKEGYRDGEFKKGDKGMWTIYTDFAKSNKQGGLSNEGMVLYLDRNTRT
  Newman          DMYSIKNLEELYDKEGYRDGEFEKGDKGMWTIYTDFAKSNKQGELSNEGMVLYLDRNTRT
  USA300_FPR3757  DMYSIKNLEELYDKEGYRDGEFEKGDKGMWTIYTDFAKSNKPGELSNEGMVLYLDRNTRT
                  ***.*****:************:****************** * ****************
  
  N315            AKGHYFVKTFYNKGKFPDRKNYKVEMKNNKIILLDKVEDINLKKRIENFKFFGQYANLKE
  NCTC8325        AKGHYFVKTFYNKGKFPDRKNYKVEMKNNKIILLDKVEDTNLKKRIENFKFFGQYANLKE
  Newman          AKGYYFVRTFYRKDKLPDRKNYKVEMKNNKIILLDKVEDKKLKQKIENFKFFSQYANLKE
  USA300_FPR3757  AKGYYFVRTFYRKDKLPDRKNYKVEMKNNKIILLDKVEDKKLKQKIENFKFFSQYANLKE
                  ***:***:***.*.*:*********************** :**::*******.*******
  
  N315            LKNYSNGDVSINENVPSYDAKFKMSNKDENVKQLRSRYNIPTDKAPVLKMHIDGDLKGSS
  NCTC8325        LKNYNNGDVSINENVPSYDAKFKMSNKDENVKQLRSRYNIPTDKAPVLKMHIDGNLKGSS
  Newman          LKNYSNGDVSINENVPSYDVKYKMSNKDENVKQLRSRYNIPTDKSPVLKMHIDGNLKGSS
  USA300_FPR3757  LKNYSNGDVSINENVPSYDVKYKMSNKDENVKQLRSRYNIPTDKSPVLKMHIDGNLKGSS
                  ****.**************.*:**********************:*********:*****
  
  N315            VGYKKLEIDFSKGEKSDLSVIDSLNFQPAKVDEDDE
  NCTC8325        VGYKKLEIDFSKGGKSDLSVIDSLNFQPAKVDEDDE
  Newman          VGDRKLEIDFSKRENSHLSVIDSLDYQPAKTNKDDE
  USA300_FPR3757  VGDRKLEIDFSKRENSHLSVIDSLDYQPAKTNKDDE
                  ** :********  :*.*******::****.::***