From AureoWiki
Revision as of 17:13, 19 June 2014 by Robot (talk | contribs) (Created page with "<protect> =Summary= * <aureodatabase>pan id</aureodatabase> * <aureodatabase>pan symbol</aureodatabase> * <aureodatabase>pan product</aureodatabase> * <aureodatabase>pan stra...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search
PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

Summary[edit | edit source]

  • pan ID?: SAUPAN001390000
  • symbol?:
  • synonym:
  • description?: phi PVL orf 51-like protein

      descriptions from strain specific annotations:

    • phi PVL orf 51-like protein
    • Phage protein
  • strand?: -
  • coordinates?: 1677366..1677530
  • synteny block?: BlockID0008690
  • occurrence?: in 18% of 33 strains

Orthologs[edit | edit source]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    11819-97:
    6850:
    71193:
    ECT-R 2:
    ED133:
    SAOV_1087
    ED98:
    HO 5096 0412:
    JH1:
    JH9:
    JKD6008:
    SAA6008_02033
    JKD6159:
    LGA251:
    M013:
    MRSA252:
    MSHR1132:
    MSSA476:
    Mu3:
    Mu50:
    MW2:
    RF122:
    ST398:
    T0131:
    SAT0131_02112
    TCH60:
    TW20:
    SATW20_19730
    USA300_TCH1516:
    VC40:

Genome Viewer[edit | edit source]

NCTC8325
Newman

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    NCTC8325        ---MPKTDSACKEYLNQFFGSKRYLYQDNERVAHIHVVNGTYYFHGHIVPGWQGVKKTFD
    Newman          MGVMTMTDNARKEYLNQFFGSKRYLYQDNERVAHIHVVNGAYYFHGHIVPDWQGVKKTFD
                       *. **.* *****************************:*********.*********

    NCTC8325        TAEELETYIKQHGLEYEEQKQLTLF
    Newman          TAEELGIYIKQHGLEYEEQKQLTLF
                    *****  ******************