PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN001222000
• symbol^?: —
• synonym:
• description^?: membrane protein

  descriptions from strain specific annotations:

  • membrane protein
  • DUF4064 domain-containing protein
• strand^?: +
• coordinates^?: 1510025..1510423
• synteny block^?: BlockID0007330
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0300
N315:
SA0292
NCTC8325:
SAOUHSC_00280
Newman:
NWMN_0246
USA300_FPR3757:
SAUSA300_0304
04-02981:
SA2981_0303
08BA02176:
C248_0292
11819-97:
MS7_0294
6850:
RSAU_000250
71193:
ST398NM01_0317
ECT-R 2:
ECTR2_264
ED133:
SAOV_0256
ED98:
SAAV_0271
HO 5096 0412:
SAEMRSA15_02600
JH1:
SaurJH1_0294
JH9:
SaurJH9_0287
JKD6008:
SAA6008_00280
JKD6159:
SAA6159_00279
LGA251:
SARLGA251_02660
M013:
M013TW_0285
MRSA252:
SAR0301
MSHR1132:
SAMSHR1132_02780
MSSA476:
SAS0281
Mu3:
SAHV_0301
Mu50:
SAV0304
MW2:
MW0281
RF122:
SAB0241
ST398:
SAPIG0317
T0131:
SAT0131_00304
TCH60:
HMPREF0772_10192
TW20:
SATW20_03090
USA300_TCH1516:
USA300HOU_0323
VC40:
SAVC_01270

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MEKSIKIMTIIGIVVQGLATVFSLLLMVLAASGVMTTDVSTTVNGEVDPVDAETAAAIFT
  N315            MEKSIKIMTIIGIVIQGLATVFSLLLMVLAASGVMTTDVSTTVNGEVDPVDAETAAAIFT
  NCTC8325        MEKSIKIMTIIGIVVQGLATVFSLLLMVLAASGVMTTDVSTTVNGEVDPVDAETAAAIFT
  Newman          MEKSIKIMTIIGIVVQGLATVFSLLLMVLAASGVMTTDVSTTVNGEVDPVDAETAAAIFT
  USA300_FPR3757  MEKSIKIMTIIGIVVQGLATVFSLLLMVLAASGVMTTDVSTTVNGEVDPVDAETAAAIFT
                  **************:*********************************************
  
  COL             VLFLSLFIFGIISIILGAIGMFKASKNKKMSGILLIIGAVISGNIITFALWLISGIKLLT
  N315            VLFLSLFIFGIISIILGAIGMFKASKNKKMSGILLIIGAVISGNIITFALWLVSGIKLLT
  NCTC8325        VLFLSLFIFGIISIILGAIGMFKASKNKKMSGILLIIGAVISGNIITFALWLISGIKLLT
  Newman          VLFLSLFIFGIISIILGAIGMFKASKNKKMSGILLIIGAVISGNIITFALWLISGIKLLT
  USA300_FPR3757  VLFLSLFIFGIISIILGAIGMFKASKNKKMSGILLIIGAVISGNIITFALWLISGIKLLT
                  ****************************************************:*******
  
  COL             NNKPKDEISDLS
  N315            NNKPKDEISDLS
  NCTC8325        NNKPKDEISDLS
  Newman          NNKPKDEISDLS
  USA300_FPR3757  NNKPKDEISDLS
                  ************