PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN001201000
• symbol^?: —
• synonym:
• description^?: TIGR01741 family protein

  descriptions from strain specific annotations:

  • TIGR01741 family protein
  • pseudogene
  • Repetitive hypothetical protein
• strand^?: +
• coordinates^?: 1472082..1472748
• synteny block^?: BlockID0007150
• occurrence^?: in 70% of 33 strains

⊟Orthologs

COL:
SACOL0297
N315:
SA0290
NCTC8325:
SAOUHSC_00278
Newman:
NWMN_0244
USA300_FPR3757:
SAUSA300_0302
04-02981:
SA2981_0301
08BA02176:
—
11819-97:
MS7_0292
6850:
—
71193:
—
ECT-R 2:
ECTR2_262
ED133:
SAOV_0236
ED98:
SAAV_0269
HO 5096 0412:
—
JH1:
SaurJH1_0292
JH9:
SaurJH9_0285
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
M013TW_0283
MRSA252:
SAR0297
MSHR1132:
SAMSHR1132_02760
MSSA476:
SAS0279
Mu3:
SAHV_0299
Mu50:
SAV0302
MW2:
MW0279
RF122:
SAB0239
ST398:
—
T0131:
—
TCH60:
—
TW20:
SATW20_03070
USA300_TCH1516:
USA300HOU_0320
VC40:
SAVC_01260

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MTFEEKLSQMYNEIANEISGMIPVEWEKVYTIAYVDDEGGEVVFNYTKPGSEDLNYYSDI
  N315            MIFEEKLSQMYNEIANEISGMIPVEWEKVYTIAYVDDEGGEVVFNYTKPGSDELNYYTYI
  NCTC8325        MTFEEKLSQMYNEIANEISGMIPVEWEKVYTIAYVDDEGGEVVFNYTKPGSEDLNYYSDI
  Newman          MTFEEKLSQMYNEIANEISGMIPVEWEKVYTIAYVDDEGGEVVFNYTKPGSEDLNYYSDI
  USA300_FPR3757  MTFEEKLSQMYNEIANEISGMIPVEWEKVYTIAYVDDEGGEVVFNYTKPGSEDLNYYSDI
                  * *************************************************::****: *
  
  COL             PKDCNVSKDIFKNSWFKVYRMFDELRETFKKEDLEPWTSCEFDFTRKGNLKVSFDYIDWI
  N315            PREYNVSEKVFYDLWTDLYRLFKKLRNAF-KEDLEPWTSCEFDFTREGNLKVSFDYIDWI
  NCTC8325        PKDCNVSKDIFKNSWFKVYRMFDELRETFKKEDLEPWTSCEFDFTRKGNLKVSFDYIDWI
  Newman          PKDCNVSKDIFKNSWFKVYRMFDELRETFKKEDLEPWTSCEFDFTRKGNLKVSFDYIDWI
  USA300_FPR3757  PKDCNVSKDIFKNSWFKVYRMFDELRETFKKEDLEPWTSCEFDFTRKGNLKVSFDYIDWI
                  *:: ***:.:* : * .:**:*.:**::* ****************:*************
  
  COL             KLGFGPSGKENYYMYKKFGILPDMEYEMEEIRAVEKYVKEQE
  N315            KLGFGPSGKENYYMYKKFGVLPETEYEMEEIREVEKYVKDQE
  NCTC8325        KLGFGPSGKENYYMYKKFGILPDMEYEMEEIRAVEKYVKEQE
  Newman          KLGFGPSGKENYYMYKKFGILPDMEYEMEEIRAVEKYVKEQE
  USA300_FPR3757  KLGFGPSGKENYYMYKKFGILPDMEYEMEEIRAVEKYVKEQE
                  *******************:**: ******** ******:**