⊟Summary[edit | edit source]
- pan ID?: SAUPAN000979000
- symbol?: capE
- synonym:
- description?: UDP-glucose 4-epimerase
- UDP-glucose 4-epimerase
- capsular polysaccharide biosynthesis protein Cap5E
- capsular polysaccharide biosynthesis protein CapE
- capsular polysaccharide synthesis enzyme CapE, putative
- capsular polysaccharide synthesis protein Cap8E
- NAD-dependent epimerase/dehydratase family protein
- capsular polysaccharide synthesis enzyme Cap8E
- capsular polysaccharide synthesis enzyme CapE
- CJ1293
- polysaccharide biosynthesis family protein
- polysaccharide biosynthesis protein CapD
- UDP-2-acetamido-2,6-dideoxy-alpha-D-xylo-4-hexulose 3,5-epimerase
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1234504..1235622
- synteny block?: BlockID0005130
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0154 (capE)
08BA02176:
C248_0142 (capE)
11819-97:
MS7_0147
6850:
RSAU_000107 (capE)
71193:
ST398NM01_0167
ECT-R 2:
ECTR2_110
ED133:
SAOV_0100
ED98:
SAAV_0121 (cap5E)
HO 5096 0412:
SAEMRSA15_01190 (capE)
JH1:
SaurJH1_0144
JH9:
SaurJH9_0139
JKD6008:
SAA6008_00131 (cap5E)
JKD6159:
SAA6159_00137 (cap5E)
LGA251:
SARLGA251_01270 (capE)
M013:
M013TW_0143
MRSA252:
SAR0155 (capE)
MSHR1132:
SAMSHR1132_01270
MSSA476:
SAS0128
Mu3:
SAHV_0152 (capE)
Mu50:
SAV0153 (capE)
MW2:
MW0128 (cap8E)
RF122:
SAB0094 (capE)
ST398:
SAPIG0167
T0131:
SAT0131_00143
TCH60:
HMPREF0772_10345 (galE)
TW20:
SATW20_01640 (capE)
USA300_TCH1516:
USA300HOU_0167 (cap5E)
VC40:
SAVC_00535
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MFDDKILLITGGTGSFGNAVMKQFLDSNIKEIRIFSRDEKKQDDIRKKYNNSKLKFYIGD
N315 MFDDKILLITGGTGSFGNAVMKRFLDSNIKEIRIFSRDEKKQDDIRKKYNNSKLKFYIGD
NCTC8325 MFDDKILLITGGTGSFGNAVMKQFLDSNIKEIRIFSRDEKKQDDIRKKYNNSKLKFYIGD
Newman MFDDKILLITGGTGSFGNAVMKQFLDSNIKEIRIFSRDEKKQDDIRKKYNNSKLKFYIGD
USA300_FPR3757 MFDDKILLITGGTGSFGNAVMKQFLDSNIKEIRIFSRDEKKQDDIRKKYNNSKLKFYIGD
**********************:*************************************
COL VRDSQSVETAMRDVDYVFHAAALKQVPSCEFFPVEAVKTNIIGTENVLQSAIHQNVKKVI
N315 VRDSQSVETAMRDVDYVFHAAALKQVPSCEFFPVEAVKTNIIGTENVLQSAIHQNVKKVI
NCTC8325 VRDSQSVETAMRDVDYVFHAAALKQVPSCEFFPVEAVKTNIIGTENVLQSAIHQNVKKVI
Newman VRDSQSVETAMRDVDYVFHAAALKQVPSCEFFPVEAVKTNIIGTENVLQSAIHQNVKKVI
USA300_FPR3757 VRDSQSVETAMRDVYYVFHAAALKQVPSCEFFPVEAVKTNIIGTENVLQSAIHQNVKKVI
************** *********************************************
COL CLSTDKAAYPINAMGISKAMMEKVFVAKSRNIRSEQTLICGTRYGNVMASRGSVIPLFID
N315 CLSTDKAAYPINAMGISKAMMEKVFVAKSRNIRSEQTLICGTRYGNVMASRGSVIPLFID
NCTC8325 CLSTDKAAYPINARGISKAMMEKVFVAKSRNIRSEQTLICGTRYGNVMASRGSVIPLFID
Newman CLSTDKAAYPINAMGISKAMMEKVFVAKSRNIRSEQTLICGTRYGNVMASRGSVIPLFID
USA300_FPR3757 CLSTDKAAYPINAMGISKAMMEKVFVAKSRNIRSEQTLICGTRYGNVMASRGSVIPLFID
************* **********************************************
COL KIKAGEPLTITDPDMTRFLMSLEDAVELVVHAFKHAETGDIMVQKAPSSTVGDLATALLE
N315 KIKAGEPLTITDPDMTRFLMSLEDAVELVVHAFKHAETGDIMVQKAPSSTVGDLATALLE
NCTC8325 KIKAGEPLTITDPDMTRFLMSLEDAVELVVHAFKHAETGDIMVQKAPSSTVGDLATALLE
Newman KIKAGEPLTITDPDMTRFLMSLEDAVELVVHAFKHAETGDIMVQKAPSSTVGDLATALLE
USA300_FPR3757 KIKAGEPLTITDPDMTRFLMSLEDAVELVVHAFKHAETGDIMVQKAPSSTVGDLATALLE
************************************************************
COL LFEADNAIEIIGTRHGEKKAETLLTREEYAQCEDMGDYFRVPADSRDLNYSNYVETGNEK
N315 LFEADNAIEIIGTRHGEKKAETLLTREEYAQCEDMGDYFRVPADSRDLNYSNYVETGNEK
NCTC8325 LFEADNAIEIIGTRHGEKKAETLLTREEYAQCEDMGDYFRVPADSRDLNYSNYVETGNEK
Newman LFEADNAIEIIGTRHGEKKAETLLTREEYAQCEDMGDYFRVPADSRDLNYSNYVETGNEK
USA300_FPR3757 LFEADNAIEIIGTRHGEKKAETLLTREEYAQCEDMGDYFRVPADSRDLNYSNYVETGNEK
************************************************************
COL ITQSYEYNSDNTHILTVEEIKEKLLTLEYVRNELNDYKASMR
N315 ITQSYEYNSDNTHILTVEEIKEKLLTLEYVRNELNDYKASMR
NCTC8325 ITQSYEYNSDNTHILTVEEIKEKLLTLEYVRNELNDYKASMR
Newman ITQSYEYNSDNTHILTVEEIKEKLLTLEYVRNELNDYKASMR
USA300_FPR3757 ITQSYEYNSDNTHILTVEEIKEKLLTLEYVRNELNDYKASMR
******************************************