⊟Summary[edit | edit source]
- pan ID?: SAUPAN000941000
- symbol?: —
- synonym:
- description?: polysaccharide extrusion protein
- polysaccharide extrusion protein
- lipopolysaccharide biosynthesis protein
- lipopolysaccharide flippase, putative
- AmrA
- lipopolysaccharide flipase protein
- Membrane protein involved in the export of O-antigen, teichoic acid lipoteichoic acids
- MOP superfamily multidrug/oligosaccharidyl-lipid/polysaccharide flippase transporter
- polysaccharide biosynthesis family protein
- polysaccharide biosynthesis protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1201689..1203152
- synteny block?: BlockID0004770
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0133
08BA02176:
C248_0121
11819-97:
MS7_0123
6850:
RSAU_000086
71193:
ST398NM01_0146
ECT-R 2:
ECTR2_88
ED133:
SAOV_0080
ED98:
SAAV_0100
HO 5096 0412:
SAEMRSA15_00990
JH1:
SaurJH1_0123
JH9:
SaurJH9_0118
JKD6008:
SAA6008_00110
JKD6159:
SAA6159_00115
LGA251:
SARLGA251_01070
M013:
M013TW_0122
MRSA252:
SAR0134
MSHR1132:
SAMSHR1132_01080
MSSA476:
SAS0106
Mu3:
SAHV_0131
Mu50:
SAV0132
MW2:
MW0106
RF122:
SAB0071
ST398:
SAPIG0146
T0131:
SAT0131_00120
TCH60:
HMPREF0772_10366
TW20:
SATW20_01430
USA300_TCH1516:
USA300HOU_0144
VC40:
SAVC_00400
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKSDSLKENIIYQGLYQLIRTMTPLITIPIISRAFGPSGVGIVSFSFNIVQYFLMIASVG
N315 MKSDSLKENIIYQGLYQLIRTMTPLITIPIISRAFGPSGVGIVSFSFNIVQYFLMIASVG
NCTC8325 MKSDSLKENIIYQGLYQLIRTMTPLITIPIISRAFGPSGVGIVSFSFNIVQYFLMIASVG
Newman MKSDSLKENIIYQGLYQLIRTMTPLITIPIISRAFGPSGVGIVSFSFNIVQYFLMIASVG
USA300_FPR3757 MKSDSLKENIIYQGLYQLIRTMTPLITIPIISRAFGPSGVGIVSFSFNIVQYFLMIASVG
************************************************************
COL VQLYFNRVIAKSVNDKRQLSQQFWDIFVSKLFLALTVFAMYMVVITIFIDDYYLIFLLQG
N315 VQLYFNRVIAKSVNDKRQLSQQFWDIFVSKLFLALTVFAMYMVVITIFIDDYYLIFLLQG
NCTC8325 VQLYFNRVIAKSVNDKRQLSQQFWDIFVSKLFLALTVFAMYMVVITIFIDDYYLIFLLQG
Newman VQLYFNRVIAKSVNDKRQLSQQFWDIFVSKLFLALTVFAMYMVVITIFIDDYYLIFLLQG
USA300_FPR3757 VQLYFNRVIAKSVNDKRQLSQQFWDIFVSKLFLALTVFAMYMVVITIFIDDYYLIFLLQG
************************************************************
COL IYIIGAALDISWFYAGTEKFKIPSLSNIVASGIVLSVVVIFVKDQSDLSLYVFTIAIVTV
N315 IYIIGAALDISWFYAGTEKFKIPSLSNIVASGIVLSVVVIFVKDQSDLSLYVFTIAIVTV
NCTC8325 IYIIGAALDISWFYAGTEKFKIPSLSNIVASGIVLSVVVIFVKDQSDLSLYVFTIAIVTV
Newman IYIIGAALDISWFYAGTEKFKIPSLSNIVASGIVLSVVVIFVKDQSDLSLYVFTIAIVTV
USA300_FPR3757 IYIIGAALDISWFYAGTEKFKIPSLSNIVASGIVLSVVVIFVKDQSDLSLYVFTIAIVTV
************************************************************
COL LNQLPLFIYLKRYISFVSVNWIHVWQLFRSSLAYLLPNGQLNLYTSISCVVLGLVGTYQQ
N315 LNQLPLFIYLKRYISFVSVNWIHVWQLFRSSLAYLLPNGQLNLYTSISCVVLGLVGTYQQ
NCTC8325 LNQLPLFIYLKRYISFVSVNWIHVWQLFRSSLAYLLPNGQLNLYTSISCVVLGLVGTYQQ
Newman LNQLPLFIYLKRYISFVSVNWIHVWQLFRSSLAYLLPNGQLNLYTSISCVVLGLVGTYQQ
USA300_FPR3757 LNQLPLFIYLKRYISFVSVNWIHVWQLFRSSLAYLLPNGQLNLYTSISCVVLGLVGTYQQ
************************************************************
COL VGIFSNAFNILTVAIIMINTFDLVMIPRITKMSIQQSHSLTKTLANNMNIQLILTIPMVF
N315 VGIFSNAFNILTVAIIMINTFDLVMIPRITKMSIQQSHSLTKTLANNMNIQLILTIPMVF
NCTC8325 VGIFSNAFNILTVAIIMINTFDLVMIPRITKMSIQQSHSLTKTLANNMNIQLILTIPMVF
Newman VGIFSNAFNILTVAIIMINTFDLVMIPRITKMSIQQSHSLTKTLANNMNIQLILTIPMVF
USA300_FPR3757 VGIFSNAFNILTVAIIMINTFDLVMIPRITKMSIQQSHSLTKTLANNMNIQLILTIPMVF
************************************************************
COL GLIAIMPSFYLWFFGEEFASTVPLMTILAILVLIIPLNMLISRQYLLIVNKIRLYNASIT
N315 GLIAIMPSFYLWFFGEEFASTVPLMTILAILVLIIPLNMLISRQYLLIVNKIRLYNASIT
NCTC8325 GLIAIMPSFYLWFFGEEFASTVPLMTILAILVLIIPLNMLISRQYLLIVNKIRLYNASIT
Newman GLIAIMPSFYLWFFGEEFASTVPLMTILAILVLIIPLNMLISRQYLLIVNKIRLYNASIT
USA300_FPR3757 GLIAIMPSFYLWFFGEEFASTVPLMTILAILVLIIPLNMLISRQYLLIVNKIRLYNASIT
************************************************************
COL IGAVINLVLCIILIYFYGIYGAAIARLITEFFLLIWRFIDITKINVKLNIVSTIQCVIAA
N315 IGAVMNLVLCLVLIYFYGIYGAAIARLITEFILLIWRFVDITKINVKLNIVSTIQCVIAA
NCTC8325 IGAVINLVLCIILIYFYGIYGAAIARLITEFFLLIWRFIDITKINVKLNIVSTIQCVIAA
Newman IGAVINLVLCIILIYFYGIYGAAIARLITEFFLLIWRFIDITKINVKLNIVSTIQCVIAA
USA300_FPR3757 IGAVINLVLCIILIYFYGIYGAAIARLITEFFLLIWRFIDITKINVKLNIVSTIQCVIAA
****:*****::*******************:******:*********************
COL VMMFIVLGVVNHYLPPTMYATLLLIAIGIVVYLLLMMTMKNQYVWQILRHLRHKTI
N315 VMMFIVLGVVNHYLPPTMYATLLLIAIGIVVYLLLMMTMKNQYVWQILRHLRHKTI
NCTC8325 VMMFIVLGVVNHYLPPTMYATLLLIAIGIVVYLLLMMTMKNQYVWQILRHLRHKTI
Newman VMMFIVLGVVNHYLPPTMYATLLLIAIGIVVYLLLMMTMKNQYVWQILRHLRHKTI
USA300_FPR3757 VMMFIVLGVVNHYLPPTMYATLLLIAIGIVVYLLLMMTMKNQYVWQILRHLRHKTI
********************************************************