NCBI: 03-AUG-2016
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus NCTC8325
- locus tag: SAOUHSC_02217
- pan locus tag?: SAUPAN001647000
- symbol: SAOUHSC_02217
- pan gene symbol?: —
- synonym:
- product: phi ETA orf 22-like protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAOUHSC_02217
- symbol: SAOUHSC_02217
- product: phi ETA orf 22-like protein
- replicon: chromosome
- strand: -
- coordinates: 2064009..2064779
- length: 771
- essential: no DEG
⊟Accession numbers[edit | edit source]
- Gene ID: 3919582 NCBI
- RefSeq: YP_500702 NCBI
- BioCyc: G1I0R-2095 BioCyc
- MicrobesOnline: 1290658 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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721ATGGCAACATTTAGAGTTTACAAAGAATCAGGTAACTTTGTCACAGTACACAAAGATTTT
ATACATGATTCTAATATAAGTTGGAAGGCTAAAGGTATTCTACTTTATTTGTTAAGTCGA
CCTGATAACTGGCAAATTTACGAAACAGAACTAGAGCAACATTCAACTGATGGACTTAGC
GGTTTAAAGAGTGGAATCAAGGAACTGGAAGAAATTGGATACATTCAACGTAGTAGAAAA
CGTGATAAAAGTGGTAGGTTAAATGGTTATGAGTACTTAGTATATGAGCAACCGCACCAC
ATTCGATTTTCCAACGTTGGAAAAACCGTTAACGGTAAAACCAACAATGGAAAAACCGTT
AATGGTAAATCGCATACTACTAATAATAATAGTACTAATAATGATTTAACTAATAATAAC
AATACTAATAATGAAGGAAGTATATTGTCGGGCAACCCGACGGTGTCTTCCATTCCCTAT
AAAGAAATTATCGAATACTTAAATAAAAAAGCAGGAAAGCATTTTAAACATAATACAGCT
AAAACAAAAGATTTTATTAAAGCAAGATGGAATCAAGATTTTAGGTTGGAGGATTTTAAA
AAGGTGATTGATATCAAAACAGCTGAATGGTTAAACACGGATAGCGATAAATACCTTAGA
CCAGAAACACTTTTTGGCAGTAAATTTGAGGGGTACCTCAATCAAAAAATACAACCAACT
GGCACGGATCAATTGGAACGCATGAAGTACGACGAAAGTTATTGGGATTAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAOUHSC_02217
- symbol: SAOUHSC_02217
- description: phi ETA orf 22-like protein
- length: 256
- theoretical pI: 9.52609
- theoretical MW: 29687.8
- GRAVY: -1.00664
⊟Function[edit | edit source]
- TIGRFAM: Mobile and extrachromosomal element functions Prophage functions phage conserved hypothetical protein, C-terminal domain (TIGR02220; HMM-score: 131.3)
- TheSEED :
- hypothetical protein
- PFAM: no clan defined Phg_2220_C; Conserved phage C-terminus (Phg_2220_C) (PF09524; HMM-score: 107.4)and 1 moreTelomerase_RBD; Telomerase ribonucleoprotein complex - RNA binding domain (PF12009; HMM-score: 13.3)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.001552
- TAT(Tat/SPI): 0.000176
- LIPO(Sec/SPII): 0.000286
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MATFRVYKESGNFVTVHKDFIHDSNISWKAKGILLYLLSRPDNWQIYETELEQHSTDGLSGLKSGIKELEEIGYIQRSRKRDKSGRLNGYEYLVYEQPHHIRFSNVGKTVNGKTNNGKTVNGKSHTTNNNSTNNDLTNNNNTNNEGSILSGNPTVSSIPYKEIIEYLNKKAGKHFKHNTAKTKDFIKARWNQDFRLEDFKKVIDIKTAEWLNTDSDKYLRPETLFGSKFEGYLNQKIQPTGTDQLERMKYDESYWD
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: [1]
Multi-gene expression profiles
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
PLoS Genet: 2016, 12(4);e1005962
[PubMed:27035918] [WorldCat.org] [DOI] (I e)