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Revision as of 19:11, 10 March 2016 by AureoSysAdmin (talk | contribs) (Text replacement - "gene Genbank" to "gene RefSeq")
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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI date : _

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus NCTC8325
  • locus tag: SAOUHSC_00352
  • pan locus tag?: SAUPAN001960000
  • symbol: SAOUHSC_00352
  • pan gene symbol?: —
  • synonym:
  • product: integrase-like protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAOUHSC_00352
  • symbol: SAOUHSC_00352
  • product: integrase-like protein
  • replicon: chromosome
  • strand: -
  • coordinates: 362987..363298
  • length: 312
  • essential: no DEG

⊟Accession numbers[edit | edit source]

  • Gene ID: 3921825 NCBI
  • RefSeq: YP_498941 NCBI

⊟Phenotype[edit | edit source]

  • Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    ATGCTTGGAATGATAAGTTTATTGATAGAGAGTACATATTCACAAATACGTCTGGTAGCC
    CTATCGACTCGAACAAAATTAGCCACATTATTAAAGGGGGGCGCTGATATTAGTTCTATT
    AAGAAACCTATAACGACGCATACATTACATCATTCGCATATATCTACACTTGCTCAATTA
    GGAATTAACTTAAAAGCAATGCAAGAGCATGTAGGTCATTCAGATTATAAAAAAAATCTA
    GAGATATACACACATGTTACTAATCAGATGGCGAAAGATATGATGAATAAATTTGAACGA
    TTGGGGAGTTAA
    60
    120
    180
    240
    300
    312

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAOUHSC_00352
  • symbol: SAOUHSC_00352
  • description: integrase-like protein
  • length: 103
  • theoretical pI: 10.3
  • theoretical MW: 11502.4
  • GRAVY: -0.146602

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing DNA metabolism DNA replication, recombination, and repair integron integrase (TIGR02249; HMM-score: 50.7)
    Genetic information processing Mobile and extrachromosomal element functions Other integron integrase (TIGR02249; HMM-score: 50.7)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair tyrosine recombinase XerD (TIGR02225; HMM-score: 48.1)
    and 1 more
    Genetic information processing DNA metabolism DNA replication, recombination, and repair tyrosine recombinase XerC (TIGR02224; HMM-score: 30.3)
  • TheSEED  :
    • Integrase, superantigen-encoding pathogenicity islands SaPI
    Phages, Prophages, Transposable elements, Plasmids Pathogenicity islands Staphylococcal pathogenicity islands SaPI  Integrase, superantigen-encoding pathogenicity islands SaPI
  • PFAM:
    DNA-mend (CL0382) Phage_integrase; Phage integrase family (PF00589; HMM-score: 36.3)
    and 1 more
    no clan defined DUF3102; Protein of unknown function (DUF3102) (PF11300; HMM-score: 14.7)

⊟Structure, modifications & interactions[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • interaction partners:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.017319
    • TAT(Tat/SPI): 0.002022
    • LIPO(Sec/SPII): 0.005988
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI: 88194151 NCBI
  • UniProt: Q2G109 UniProt
  • protein Genbank : _
  • RefSeq: YP_498941 NCBI

⊟Protein sequence[edit | edit source]

  • MLGMISLLIESTYSQIRLVALSTRTKLATLLKGGADISSIKKPITTHTLHHSHISTLAQLGINLKAMQEHVGHSDYKKNLEIYTHVTNQMAKDMMNKFERLGS

⊟Peptides[edit | edit source]

  • experimentally validated:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • sigma factors : _
  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
    Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
    PLoS Genet: 2016, 12(4);e1005962
    [PubMed:27035918] [WorldCat.org] [DOI] (I e)

⊟Relevant publications[edit | edit source]

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