From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS11380 [old locus tag: SACOL2165 ]
  • pan locus tag?: SAUPAN005565000
  • symbol: fecD
  • pan gene symbol?: htsC
  • synonym:
  • product: iron-dicitrate ABC transporter permease

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS11380 [old locus tag: SACOL2165 ]
  • symbol: fecD
  • product: iron-dicitrate ABC transporter permease
  • replicon: chromosome
  • strand: -
  • coordinates: 2243855..2244823
  • length: 969
  • essential: unknown other strains

Accession numbers[edit | edit source]

  • Location: NC_002951 (2243855..2244823) NCBI
  • BioCyc: SACOL_RS11380 BioCyc
  • MicrobesOnline: see SACOL2165

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGATGACAACGAAAATTATACGTCGTTATAGTTTAATCACAATCCTTTTAATTGTGAGT
    ATATTCATAAGTTTATGTGTAGGGTCTGTCATGATTCATCCGATTGATGCTATTAAGGGA
    ATCTTTACACAAGATGATTTTATTTTAAATGAGTATCGTATACCTAGAACATTACTTGGT
    ATTATTATCGGTAGTAGCTTGGCTATTTCAGGTGCAATTATACAAGCTGTAATAAGAAAC
    CCGTTAGCCTCACCTGATGTTATAGGTATTTCTAAAGGTGCCAGTTTAGCTGCTGTGATT
    ATTATTATGACCTTTCCAACAGCACCATTGTTTGTATTACCTATAGGTTCATTCTTAGGT
    GCCTTTGCAGTAAGTTTATTTTTATCATTTTTAATTTCAAAATATGATGTTAAAGGTTCA
    AAGCTTGCCTTAATTGGTTTAGCAATAGGCGCAATATGTACGGCGATTGTGCAGTTCTTA
    TTAATCAGAAATCCACTGGAAGCAAACAAAGCGCTTGTTTGGTTGACAGGTAGTCTATAT
    GGACATGATATGTCGAATATTTATACTATATTACCTTGGTTTTTAATAACGATACCAATC
    ATCATTTTATTGAGTTATCAATTAGATGTATTGAATCTAGGTGATGCTGTTGCAACCGCA
    CTCGGTTTAAAAGTTAAAACTATTAAAATGCTATTGTTAATTTTAGCAGTAATATTAGCA
    GGATCCGCAATTTCAGTTGTCGGTGGTATTAGCTTTTTAGGATTAATTGCACCTCATATT
    GCGAGACAATTAATAGGAAATAAAACATTACACGTTATTATCATGTCGGGGTTAATTGGT
    GCTATATTGTTAACATTTGGAGATGGTTTAGCCCGTGGCATTCATCCGCCACTGGATATT
    CCTGTTGGGGTTATCATTGCAATTATCGGTGCACCATACTTCTTAATATTATTACGAAGA
    ATGAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    969

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SACOL_RS11380 [old locus tag: SACOL2165 ]
  • symbol: FecD
  • description: iron-dicitrate ABC transporter permease
  • length: 322
  • theoretical pI: 10.2795
  • theoretical MW: 34347.7
  • GRAVY: 1.19379

Function[edit | edit source]

  • TIGRFAM:
    proposed F420-0 ABC transporter, permease protein (TIGR03869; HMM-score: 172.1)
  • TheSEED: see SACOL2165
  • PFAM:
    Membrane_trans (CL0142) FecCD; FecCD transport family (PF01032; HMM-score: 300.4)
    and 1 more
    ABC-3; ABC 3 transport family (PF00950; HMM-score: 24)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 8
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.115119
    • TAT(Tat/SPI): 0.001049
    • LIPO(Sec/SPII): 0.320841
  • predicted transmembrane helices (TMHMM): 8

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MMTTKIIRRYSLITILLIVSIFISLCVGSVMIHPIDAIKGIFTQDDFILNEYRIPRTLLGIIIGSSLAISGAIIQAVIRNPLASPDVIGISKGASLAAVIIIMTFPTAPLFVLPIGSFLGAFAVSLFLSFLISKYDVKGSKLALIGLAIGAICTAIVQFLLIRNPLEANKALVWLTGSLYGHDMSNIYTILPWFLITIPIIILLSYQLDVLNLGDAVATALGLKVKTIKMLLLILAVILAGSAISVVGGISFLGLIAPHIARQLIGNKTLHVIIMSGLIGAILLTFGDGLARGIHPPLDIPVGVIIAIIGAPYFLILLRRMK

Experimental data[edit | edit source]

  • experimentally validated: see SACOL2165
  • protein localization: see SACOL2165
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]