From AureoWiki
Revision as of 09:02, 11 March 2016 by AureoSysAdmin (talk | contribs) (Text replacement - "* <aureodatabase>protein Genbank</aureodatabase> " to "")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search

NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS10595 [old locus tag: SACOL2029 ]
  • pan locus tag?: SAUPAN005284000
  • symbol: SACOL_RS10595
  • pan gene symbol?: scrB
  • synonym:
  • product: sucrose-6-phosphate hydrolase

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS10595 [old locus tag: SACOL2029 ]
  • symbol: SACOL_RS10595
  • product: sucrose-6-phosphate hydrolase
  • replicon: chromosome
  • strand: -
  • coordinates: 2087219..2088703
  • length: 1485
  • essential: unknown other strains

Accession numbers[edit | edit source]

  • Location: NC_002951 (2087219..2088703) NCBI
  • BioCyc: G1G4B-2229 BioCyc
  • MicrobesOnline: see SACOL2029

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    ATGACCGAATGGACTGGAGAAGAACGTTATCAACGAATCGAGGACGTTGATACTGAGTAT
    TTTAAAACATTAAAACAACAAGTTGATCAATCAAAATTTCGTCAACAATTTCATATACAA
    CCAGAAACAGGCTTATTAAATGACCCCAACGGACTTATTTTTTATAAAGGGAAGTATTAT
    GTTTCACATCAATGGTTCCCATTAGGCGCAGTACATGGCTTAAAGTATTGGTATAACTAC
    ACGAGTGATGACTTAATAAACTTTAAAGCTGAAGGGCCAATTTTAAATCCAGATACTAAA
    TATGACAGCCATGGTGTATATAGCGGTAGCGCTTTTGAATATAACGGGCATTTATATTAT
    ATGTACACAGGAAATCATCGAGATAATCATTGGCAACGACATGCGAGTCAGATGATCGCA
    CGATTGAAAGAAGACGGTTCAGTTGAAAAGTTTCCAAAGCCAGTAATTAGCCAACAACCA
    GAAGGATATACGAGTCATTTTAGAGATCCTAAAGTTTTTAAATATGATGAGAAATATTAT
    GCAATCATTGGTGCACAAAATAATGATCAGCAAGGTCGATTATTACTTTATAATACTGAA
    GATATAATTAATTGGCATTATTTAGGTGAAATAAATACAGAGTTGGATGATTTTGGATAT
    ATGTGGGAATGCCCAGATTACTTTAATGTAGATAATCAAGATGTCATACTTATTTGTCCA
    CAAGGTATTGAACCAAAAGGCGATCAGTTCAAAAATATTTATCAAAGTGGTTATATACTT
    GGAAAGTTTGATATTGAAAAGTTAACATATGAACATGAAAATTTTGTCGAGCTTGATAAT
    GGTTTTGATTTCTATGCACCTCAAACATTTTTAGATGAAAAAGGCCGACGAGTACTAATT
    GGATGGATGGGGTTACCGGAAATCGAATATCCTACTGATAATGAAGGATGGGCCCATTGC
    TTAACAACTCCTCGTGTATTAAATGTAGAAAATGGTCAACTTAAGCAACGTCCATATCCA
    GCGTTGGAAAAATTACGTCACAATAAAGAGACAGCATTAGGCTACGCAAATAAATTTACT
    CGAAAATTACATCCGTATGAAGGTAAACAGTATGAATTAATCATAGATATTTTGGATAAT
    GATGCTACCGAAGTGTACTTTGAATTACGTACATCTAAGACTTCTTCAACATTAATTGCT
    TATAACAAGCGTGAAAATAAAATAACATTAGATCGCAGCGACAGTGGTTTATTGCCGACA
    AATGTTGAAGGTACGACGCGTAGTACGATATTAGACACGCCATTAAAGCAATTACAAATT
    TTTGTTGATACATCTAGTATAGAAATTTTCTGTAATGATGGAGAACGTGTTTTGACATCT
    CGAATTTTCCCGACAGAAGACGCACTAGGTATTAAAACATCAACAGAATCAGGGCAAGTA
    TATTTACAATTTACTAAATATGATTTAAAGGATGAACATAAATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1485

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SACOL_RS10595 [old locus tag: SACOL2029 ]
  • symbol: SACOL_RS10595
  • description: sucrose-6-phosphate hydrolase
  • length: 494
  • theoretical pI: 4.97418
  • theoretical MW: 57816
  • GRAVY: -0.745344

Function[edit | edit source]

  • reaction:
    EC 3.2.1.26?  ExPASy
    Beta-fructofuranosidase Hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides
  • TIGRFAM:
    Metabolism Energy metabolism Biosynthesis and degradation of polysaccharides sucrose-6-phosphate hydrolase (TIGR01322; EC 3.2.1.-; HMM-score: 610.8)
  • TheSEED: see SACOL2029
  • PFAM:
    B_Fructosidase (CL0143) Glyco_hydro_32N; Glycosyl hydrolases family 32 N-terminal domain (PF00251; HMM-score: 329.6)
    and 2 more
    Concanavalin (CL0004) Glyco_hydro_32C; Glycosyl hydrolases family 32 C terminal (PF08244; HMM-score: 82.6)
    B_Fructosidase (CL0143) Glyco_hydro_130; beta-1,4-mannooligosaccharide phosphorylase (PF04041; HMM-score: 17.3)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.007649
    • TAT(Tat/SPI): 0.001554
    • LIPO(Sec/SPII): 0.001377
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MTEWTGEERYQRIEDVDTEYFKTLKQQVDQSKFRQQFHIQPETGLLNDPNGLIFYKGKYYVSHQWFPLGAVHGLKYWYNYTSDDLINFKAEGPILNPDTKYDSHGVYSGSAFEYNGHLYYMYTGNHRDNHWQRHASQMIARLKEDGSVEKFPKPVISQQPEGYTSHFRDPKVFKYDEKYYAIIGAQNNDQQGRLLLYNTEDIINWHYLGEINTELDDFGYMWECPDYFNVDNQDVILICPQGIEPKGDQFKNIYQSGYILGKFDIEKLTYEHENFVELDNGFDFYAPQTFLDEKGRRVLIGWMGLPEIEYPTDNEGWAHCLTTPRVLNVENGQLKQRPYPALEKLRHNKETALGYANKFTRKLHPYEGKQYELIIDILDNDATEVYFELRTSKTSSTLIAYNKRENKITLDRSDSGLLPTNVEGTTRSTILDTPLKQLQIFVDTSSIEIFCNDGERVLTSRIFPTEDALGIKTSTESGQVYLQFTKYDLKDEHK

Experimental data[edit | edit source]

  • experimentally validated: see SACOL2029
  • protein localization: see SACOL2029
  • quantitative data / protein copy number per cell: see SACOL2029
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]