Latest revision as of 12:44, 11 March 2016

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

organism: Staphylococcus aureus COL
locus tag: SACOL_RS06490 [old locus tag: SACOL1271 ]
pan locus tag^?: SAUPAN003552000
symbol: SACOL_RS06490
pan gene symbol^?: hslU
synonym: clpY
product: HslU--HslV peptidase ATPase subunit

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

type: CDS
locus tag: SACOL_RS06490 [old locus tag: SACOL1271 ]
symbol: SACOL_RS06490
product: HslU--HslV peptidase ATPase subunit
replicon: chromosome
strand: +
coordinates: 1282043..1283446
length: 1404
essential: unknown other strains

⊟Accession numbers[edit | edit source]

Location: NC_002951 (1282043..1283446) NCBI
BioCyc: G1G4B-1372 BioCyc
MicrobesOnline: see SACOL1271

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
ATGGATACAGCTGGAATAAGATTAACTCCAAAAGAAATCGTATCTAAATTAAATGAATAC
ATCGTTGGACAAAATGATGCTAAACGTAAAGTGGCAATTGCCCTACGTAATCGATACAGA
AGAAGTTTATTAGATGAGGAATCAAAGCAAGAAATTTCACCTAAAAATATTTTGATGATT
GGACCAACCGGCGTTGGTAAAACTGAAATTGCAAGAAGAATGGCCAAAGTTGTCGGCGCG
CCATTTATAAAAGTAGAAGCTACTAAATTTACTGAGGTAGGTTATGTAGGACGAGATGTT
GAAAGTATGGTTAGAGATCTTGTTGATGTTTCAGTAAGATTAGTCAAGGCGCAGAAAAAA
TCATTGGTACAAGATGAAGCAACAGCTAAGGCCAATGAAAAACTTGTTAAGTTATTAGTT
CCAAGTATGAAAAAGAAAGCGTCTCAAACGAATAATCCTTTAGAGTCACTTTTCGGAGGT
GCAATTCCAAATTTCGGACAAAATAACGAAGATGAAGAAGAACCACCTACTGAGGAAATT
AAAACAAAACGTTCTGAAATTAAGAGACAGCTAGAAGAAGGCAAACTTGAAAAAGAAAAG
GTAAGAATTAAAGTCGAACAAGATCCTGGTGCTTTAGGTATGCTAGGTACAAATCAAAAT
CAGCAAATGCAAGAGATGATGAATCAATTAATGCCTAAAAAGAAAGTTGAGCGAGAAGTT
GCTGTTGAGACGGCAAGGAAAATCTTAGCTGATAGTTATGCGGATGAACTAATTGATCAA
GAAAGCGCTAACCAAGAAGCGCTTGAATTAGCAGAACAAATGGGTATCATCTTTATAGAT
GAAATCGACAAAGTTGCGACGAATAATCATAATAGTGGTCAAGATGTCTCAAGACAAGGT
GTTCAAAGAGATATTTTACCTATACTTGAAGGTAGCGTTATTCAAACCAAATATGGTACT
GTGAATACTGAACATATGCTGTTTATAGGTGCTGGAGCTTTCCATGTATCTAAGCCGAGT
GACTTGATACCAGAATTGCAAGGTCGTTTTCCGATTAGAGTTGAACTTGATAGTTTATCG
GTAGAAGATTTTGTAAGAATTTTGACAGAACCAAAATTGTCATTAATTAAACAATATGAA
GCATTGCTTCAAACAGAAGAAGTTACTGTAAACTTTACCGATGAAGCAATTACTCGCTTA
GCTGAGATTGCTTATCAAGTAAATCAAGATACAGACAACATTGGTGCACGTCGACTTCAT
ACAATTTTAGAAAAGATGCTAGAAGATTTATCATTCGAAGCACCAAGTATGCCGAATGCA
GTTGTAGATATTACCCCACAATATGTTGATGATAAATTAAAATCAATTTCAACAAATAAA
GATTTAAGTGCATTTATTCTATAA
60
120
180
240
300
360
420
480
540
600
660
720
780
840
900
960
1020
1080
1140
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1260
1320
1380
1404

⊟Protein[edit | edit source]

⊟General[edit | edit source]

locus tag: SACOL_RS06490 [old locus tag: SACOL1271 ]
symbol: SACOL_RS06490
description: HslU--HslV peptidase ATPase subunit
length: 467
theoretical pI: 4.95489
theoretical MW: 52314.5
GRAVY: -0.428266

⊟Function[edit | edit source]

TIGRFAM:
Genetic information processing Protein fate Protein folding and stabilization ATP-dependent protease HslVU, ATPase subunit (TIGR00390; HMM-score: 621)
and 18 more
Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides ATP-dependent Clp protease, ATP-binding subunit ClpX (TIGR00382; HMM-score: 206)
Genetic information processing Protein fate Protein folding and stabilization ATP-dependent Clp protease, ATP-binding subunit ClpX (TIGR00382; HMM-score: 206)
Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides ATP-dependent Clp protease ATP-binding subunit ClpA (TIGR02639; HMM-score: 46.4)
26S proteasome subunit P45 family (TIGR01242; HMM-score: 36.4)
AAA family ATPase, CDC48 subfamily (TIGR01243; HMM-score: 30)
Cellular processes Cellular processes Cell division ATP-dependent metallopeptidase HflB (TIGR01241; EC 3.4.24.-; HMM-score: 27.4)
Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides ATP-dependent metallopeptidase HflB (TIGR01241; EC 3.4.24.-; HMM-score: 27.4)
Genetic information processing DNA metabolism DNA replication, recombination, and repair Holliday junction DNA helicase RuvB (TIGR00635; EC 3.6.4.12; HMM-score: 26.1)
Cellular processes Cellular processes Other gas vesicle protein GvpN (TIGR02640; HMM-score: 22.1)
Cellular processes Cellular processes Chemotaxis and motility flagellar biosynthesis protein FlhF (TIGR03499; HMM-score: 21.4)
Cellular processes Cellular processes Pathogenesis type VI secretion ATPase, ClpV1 family (TIGR03345; HMM-score: 18.3)
Genetic information processing Protein fate Protein and peptide secretion and trafficking type VI secretion ATPase, ClpV1 family (TIGR03345; HMM-score: 18.3)
Genetic information processing Protein fate Protein and peptide secretion and trafficking type VII secretion AAA-ATPase EccA (TIGR03922; HMM-score: 18)
Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides endopeptidase La (TIGR00763; EC 3.4.21.53; HMM-score: 16.8)
Genetic information processing DNA metabolism DNA replication, recombination, and repair orc1/cdc6 family replication initiation protein (TIGR02928; HMM-score: 15.7)
Genetic information processing Protein synthesis tRNA and rRNA base modification tRNA 2-selenouridine synthase (TIGR03167; EC 2.9.1.-; HMM-score: 15.6)
Genetic information processing DNA metabolism DNA replication, recombination, and repair DNA polymerase III, subunit gamma and tau (TIGR02397; EC 2.7.7.7; HMM-score: 11.7)
type IV conjugative transfer system coupling protein TraD (TIGR02759; HMM-score: 11.7)
TheSEED: see SACOL1271
PFAM:
P-loop_NTPase (CL0023) AAA_2; AAA domain (Cdc48 subfamily) (PF07724; HMM-score: 147.1)
and 26 more
AAA; ATPase family associated with various cellular activities (AAA) (PF00004; HMM-score: 58.4)
no clan defined ClpB_D2-small; C-terminal, D2-small domain, of ClpB protein (PF10431; HMM-score: 31.1)
P-loop_NTPase (CL0023) AAA_5; AAA domain (dynein-related subfamily) (PF07728; HMM-score: 30.8)
MCM; MCM2/3/5 family (PF00493; HMM-score: 21.6)
RuvB_N; Holliday junction DNA helicase ruvB N-terminus (PF05496; HMM-score: 21.4)
Mg_chelatase; Magnesium chelatase, subunit ChlI (PF01078; HMM-score: 19.8)
AAA_22; AAA domain (PF13401; HMM-score: 19.8)
Sigma54_activat; Sigma-54 interaction domain (PF00158; HMM-score: 19.2)
TIP49; TIP49 C-terminus (PF06068; HMM-score: 18.8)
AAA_28; AAA domain (PF13521; HMM-score: 17.7)
AAA_16; AAA ATPase domain (PF13191; HMM-score: 17.4)
AAA_33; AAA domain (PF13671; HMM-score: 16.2)
Zeta_toxin; Zeta toxin (PF06414; HMM-score: 15.9)
TniB; Bacterial TniB protein (PF05621; HMM-score: 15.4)
AAA_18; AAA domain (PF13238; HMM-score: 14.6)
AFG1_ATPase; AFG1-like ATPase (PF03969; HMM-score: 14.4)
DEAD; DEAD/DEAH box helicase (PF00270; HMM-score: 14.2)
IstB_IS21; IstB-like ATP binding protein (PF01695; HMM-score: 13.8)
TrwB_AAD_bind; Type IV secretion-system coupling protein DNA-binding domain (PF10412; HMM-score: 13.6)
TsaE; Threonylcarbamoyl adenosine biosynthesis protein TsaE (PF02367; HMM-score: 13.5)
IPT; Isopentenyl transferase (PF01745; HMM-score: 13.1)
ResIII; Type III restriction enzyme, res subunit (PF04851; HMM-score: 13.1)
AAA_24; AAA domain (PF13479; HMM-score: 13.1)
NTPase_1; NTPase (PF03266; HMM-score: 11.3)
no clan defined NifW; Nitrogen fixation protein NifW (PF03206; HMM-score: 11)
P-loop_NTPase (CL0023) AAA_19; AAA domain (PF13245; HMM-score: 8.3)

⊟Structure, modifications & cofactors[edit | edit source]

domains:
modifications:
cofactors:
effectors:

⊟Localization[edit | edit source]

PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.95
- Cytoplasmic Membrane Score: 0.05
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 0
LocateP:
SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.003554
- TAT(Tat/SPI): 0.000221
- LIPO(Sec/SPII): 0.000439
predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

GI: 446301199 NCBI
RefSeq: WP_000379054 NCBI
UniProt: see SACOL1271

⊟Protein sequence[edit | edit source]

MDTAGIRLTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGKTEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEATAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEIKRQLEEGKLEKEKVRIKVEQDPGALGMLGTNQNQQMQEMMNQLMPKKKVEREVAVETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSGQDVSRQGVQRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELDSLSVEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDNIGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL

⊟Experimental data[edit | edit source]

experimentally validated: see SACOL1271
protein localization: see SACOL1271
quantitative data / protein copy number per cell: see SACOL1271

interaction partners:

SACOL_RS11135	(deoA)	pyrimidine-nucleoside phosphorylase ^[1] (data from MRSA252)
SACOL_RS00030		DNA polymerase III subunit beta ^[1] (data from MRSA252)
SACOL_RS00470		peptidoglycan-binding protein LysM ^[1] (data from MRSA252)
SACOL_RS02330		IMP dehydrogenase ^[1] (data from MRSA252)
SACOL_RS03030		50S ribosomal protein L1 ^[1] (data from MRSA252)
SACOL_RS03035		50S ribosomal protein L10 ^[1] (data from MRSA252)
SACOL_RS03040		50S ribosomal protein L7/L12 ^[1] (data from MRSA252)
SACOL_RS03075		elongation factor G ^[1] (data from MRSA252)
SACOL_RS03080		elongation factor Tu ^[1] (data from MRSA252)
SACOL_RS04840		NADH dehydrogenase ^[1] (data from MRSA252)
SACOL_RS04950		glucose-6-phosphate isomerase ^[1] (data from MRSA252)
SACOL_RS04980		hypothetical protein ^[1] (data from MRSA252)
SACOL_RS05185		enoyl-ACP reductase ^[1] (data from MRSA252)
SACOL_RS05630		pyruvate dehydrogenase E1 component subunit alpha ^[1] (data from MRSA252)
SACOL_RS05635		pyruvate dehydrogenase E1 component subunit beta ^[1] (data from MRSA252)
SACOL_RS05640		dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex ^[1] (data from MRSA252)
SACOL_RS05645		dihydrolipoyl dehydrogenase ^[1] (data from MRSA252)
SACOL_RS06140		cell division protein FtsZ ^[1] (data from MRSA252)
SACOL_RS06420		50S ribosomal protein L19 ^[1] (data from MRSA252)
SACOL_RS06505		30S ribosomal protein S2 ^[1] (data from MRSA252)
SACOL_RS06575		translation initiation factor IF-2 ^[1] (data from MRSA252)
SACOL_RS07385		dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex ^[1] (data from MRSA252)
SACOL_RS07390		2-oxoglutarate dehydrogenase E1 component ^[1] (data from MRSA252)
SACOL_RS07705		DNA-binding protein HU ^[1] (data from MRSA252)
SACOL_RS08210		superoxide dismutase ^[1] (data from MRSA252)
SACOL_RS08680		50S ribosomal protein L21 ^[1] (data from MRSA252)
SACOL_RS08865		aldehyde dehydrogenase ^[1] (data from MRSA252)
SACOL_RS08905		isocitrate dehydrogenase (NADP(+)) ^[1] (data from MRSA252)
SACOL_RS08930		pyruvate kinase ^[1] (data from MRSA252)
SACOL_RS08995		universal stress protein UspA ^[1] (data from MRSA252)
SACOL_RS09045		30S ribosomal protein S4 ^[1] (data from MRSA252)
SACOL_RS09225		D-alanine aminotransferase ^[1] (data from MRSA252)
SACOL_RS10945		UDP-N-acetylglucosamine 1-carboxyvinyltransferase ^[1] (data from MRSA252)
SACOL_RS11070		UDP-N-acetylglucosamine 1-carboxyvinyltransferase ^[1] (data from MRSA252)
SACOL_RS11435		Asp23/Gls24 family envelope stress response protein ^[1] (data from MRSA252)
SACOL_RS11615		30S ribosomal protein S9 ^[1] (data from MRSA252)
SACOL_RS11645		50S ribosomal protein L17 ^[1] (data from MRSA252)
SACOL_RS11655		30S ribosomal protein S11 ^[1] (data from MRSA252)
SACOL_RS11685		50S ribosomal protein L15 ^[1] (data from MRSA252)
SACOL_RS11695		30S ribosomal protein S5 ^[1] (data from MRSA252)
SACOL_RS11705		50S ribosomal protein L6 ^[1] (data from MRSA252)
SACOL_RS11720		50S ribosomal protein L5 ^[1] (data from MRSA252)
SACOL_RS11735		30S ribosomal protein S17 ^[1] (data from MRSA252)
SACOL_RS11750		30S ribosomal protein S3 ^[1] (data from MRSA252)
SACOL_RS11755		50S ribosomal protein L22 ^[1] (data from MRSA252)
SACOL_RS11760		30S ribosomal protein S19 ^[1] (data from MRSA252)
SACOL_RS11765		50S ribosomal protein L2 ^[1] (data from MRSA252)
SACOL_RS11770		50S ribosomal protein L23 ^[1] (data from MRSA252)
SACOL_RS13365		pyruvate oxidase ^[1] (data from MRSA252)
SACOL_RS13725		malate:quinone oxidoreductase ^[1] (data from MRSA252)

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

regulator:

⊟Transcription pattern[edit | edit source]

S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

Aureolib: see SACOL1271

⊟Protein stability[edit | edit source]

half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

↑ ^1.00 ^1.01 ^1.02 ^1.03 ^1.04 ^1.05 ^1.06 ^1.07 ^1.08 ^1.09 ^1.10 ^1.11 ^1.12 ^1.13 ^1.14 ^1.15 ^1.16 ^1.17 ^1.18 ^1.19 ^1.20 ^1.21 ^1.22 ^1.23 ^1.24 ^1.25 ^1.26 ^1.27 ^1.28 ^1.29 ^1.30 ^1.31 ^1.32 ^1.33 ^1.34 ^1.35 ^1.36 ^1.37 ^1.38 ^1.39 ^1.40 ^1.41 ^1.42 ^1.43 ^1.44 ^1.45 ^1.46 ^1.47 ^1.48 ^1.49 Artem Cherkasov, Michael Hsing, Roya Zoraghi, Leonard J Foster, Raymond H See, Nikolay Stoynov, Jihong Jiang, Sukhbir Kaur, Tian Lian, Linda Jackson, Huansheng Gong, Rick Swayze, Emily Amandoron, Farhad Hormozdiari, Phuong Dao, Cenk Sahinalp, Osvaldo Santos-Filho, Peter Axerio-Cilies, Kendall Byler, William R McMaster, Robert C Brunham, B Brett Finlay, Neil E Reiner
Mapping the protein interaction network in methicillin-resistant Staphylococcus aureus.
J Proteome Res: 2011, 10(3);1139-50
[PubMed:21166474] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

[pubmed21166474-1] 1.00 ^1.01 ^1.02 ^1.03 ^1.04 ^1.05 ^1.06 ^1.07 ^1.08 ^1.09 ^1.10 ^1.11 ^1.12 ^1.13 ^1.14 ^1.15 ^1.16 ^1.17 ^1.18 ^1.19 ^1.20 ^1.21 ^1.22 ^1.23 ^1.24 ^1.25 ^1.26 ^1.27 ^1.28 ^1.29 ^1.30 ^1.31 ^1.32 ^1.33 ^1.34 ^1.35 ^1.36 ^1.37 ^1.38 ^1.39 ^1.40 ^1.41 ^1.42 ^1.43 ^1.44 ^1.45 ^1.46 ^1.47 ^1.48 ^1.49 Artem Cherkasov, Michael Hsing, Roya Zoraghi, Leonard J Foster, Raymond H See, Nikolay Stoynov, Jihong Jiang, Sukhbir Kaur, Tian Lian, Linda Jackson, Huansheng Gong, Rick Swayze, Emily Amandoron, Farhad Hormozdiari, Phuong Dao, Cenk Sahinalp, Osvaldo Santos-Filho, Peter Axerio-Cilies, Kendall Byler, William R McMaster, Robert C Brunham, B Brett Finlay, Neil E Reiner
Mapping the protein interaction network in methicillin-resistant Staphylococcus aureus.
J Proteome Res: 2011, 10(3);1139-50
[PubMed:21166474] [WorldCat.org] [DOI] (I p)

[1]

@@ Line 1: / Line 1: @@
+__TOC__
 <protect>
-<aureodatabase>NCBI date</aureodatabase>
+<aureodatabase>annotation</aureodatabase>
 =Summary=
-* <aureodatabase>organism</aureodatabase>
+*<aureodatabase>organism</aureodatabase>
-* <aureodatabase>locus</aureodatabase>
+*<aureodatabase>locus</aureodatabase>
-* <aureodatabase>pan locus</aureodatabase>
+*<aureodatabase>pan locus</aureodatabase>
-* <aureodatabase>gene symbol</aureodatabase>
+*<aureodatabase>gene symbol</aureodatabase>
-* <aureodatabase>pan gene symbol</aureodatabase>
+*<aureodatabase>pan gene symbol</aureodatabase>
-* <aureodatabase>gene synonyms</aureodatabase>
+*<aureodatabase>gene synonyms</aureodatabase>
-* <aureodatabase>product</aureodatabase>
+*<aureodatabase>product</aureodatabase>
 </protect>
@@ Line 24: / Line 25: @@
 ==General==
-* <aureodatabase>gene type</aureodatabase>
+*<aureodatabase>gene type</aureodatabase>
-* <aureodatabase>locus</aureodatabase>
+*<aureodatabase>locus</aureodatabase>
-* <aureodatabase>gene symbol</aureodatabase>
+*<aureodatabase>gene symbol</aureodatabase>
-* <aureodatabase>product</aureodatabase>
+*<aureodatabase>product</aureodatabase>
-* <aureodatabase>gene replicon</aureodatabase>
+*<aureodatabase>gene replicon</aureodatabase>
-* <aureodatabase>strand</aureodatabase>
+*<aureodatabase>strand</aureodatabase>
-* <aureodatabase>gene coordinates</aureodatabase>
+*<aureodatabase>gene coordinates</aureodatabase>
-* <aureodatabase>gene length</aureodatabase>
+*<aureodatabase>gene length</aureodatabase>
-* <aureodatabase>essential</aureodatabase>
+*<aureodatabase>essential</aureodatabase>
+*<aureodatabase>gene comment</aureodatabase>
 </protect>
@@ Line 38: / Line 40: @@
 ==Accession numbers==
-* <aureodatabase>gene GI</aureodatabase>
+*<aureodatabase>gene location</aureodatabase>
-* <aureodatabase>gene Genbank</aureodatabase>
+*<aureodatabase>gene BioCyc</aureodatabase>
+*<aureodatabase>gene MicrobesOnline</aureodatabase>
 </protect>
 <protect>
 ==Phenotype==
 </protect>
-* Share your knowledge and add information here. [<span class="plainlinks">[http://www.protecs.uni-greifswald.de/aureowiki/index.php?title={{PAGENAMEE}}&action=edit&section=6 edit]</span>]
+Share your knowledge and add information here. [<span class="plainlinks">[//aureowiki.med.uni-greifswald.de/index.php?title={{PAGENAMEE}}&veaction=edit&section=6 edit]</span>]
 <protect>
 ==DNA sequence==
-* <aureodatabase>gene sequence</aureodatabase>
+*<aureodatabase>gene sequence</aureodatabase>
 </protect>
 <protect>
+<aureodatabase>RNA regulated operons</aureodatabase>
+</protect>
+<protect>
 =Protein=
 <aureodatabase>protein 3D view</aureodatabase>
 ==General==
-* <aureodatabase>locus</aureodatabase>
+*<aureodatabase>locus</aureodatabase>
-* <aureodatabase>protein symbol</aureodatabase>
+*<aureodatabase>protein symbol</aureodatabase>
-* <aureodatabase>protein description</aureodatabase>
+*<aureodatabase>protein description</aureodatabase>
-* <aureodatabase>protein length</aureodatabase>
+*<aureodatabase>protein length</aureodatabase>
-* <aureodatabase>theoretical pI</aureodatabase>
+*<aureodatabase>theoretical pI</aureodatabase>
-* <aureodatabase>theoretical MW</aureodatabase>
+*<aureodatabase>theoretical MW</aureodatabase>
-* <aureodatabase>GRAVY</aureodatabase>
+*<aureodatabase>GRAVY</aureodatabase>
 </protect>
@@ Line 71: / Line 77: @@
 ==Function==
-* <aureodatabase>protein reaction</aureodatabase>
+*<aureodatabase>protein reaction</aureodatabase>
-* <aureodatabase>protein TIGRFAM</aureodatabase>
+*<aureodatabase>protein TIGRFAM</aureodatabase>
-* <aureodatabase>protein TheSeed</aureodatabase>
+*<aureodatabase>protein TheSeed</aureodatabase>
-* <aureodatabase>protein PFAM</aureodatabase>
+*<aureodatabase>protein PFAM</aureodatabase>
 </protect>
 <protect>
-==Structure, modifications & interactions==
+==Structure, modifications & cofactors==
-* <aureodatabase>protein domains</aureodatabase>
+*<aureodatabase>protein domains</aureodatabase>
-* <aureodatabase>protein modifications</aureodatabase>
+*<aureodatabase>protein modifications</aureodatabase>
-* <aureodatabase>protein cofactors</aureodatabase>
+*<aureodatabase>protein cofactors</aureodatabase>
-* <aureodatabase>protein effectors</aureodatabase>
+*<aureodatabase>protein effectors</aureodatabase>
-* <aureodatabase>protein partners</aureodatabase>
+*<aureodatabase>protein regulated operons</aureodatabase>
 </protect>
@@ Line 90: / Line 96: @@
 ==Localization==
-* <aureodatabase>protein Psortb</aureodatabase>
+*<aureodatabase>protein Psortb</aureodatabase>
-* <aureodatabase>protein LocateP</aureodatabase>
+*<aureodatabase>protein LocateP</aureodatabase>
-* <aureodatabase>protein SignalP</aureodatabase>
+*<aureodatabase>protein SignalP</aureodatabase>
-* <aureodatabase>protein TMHMM</aureodatabase>
+*<aureodatabase>protein TMHMM</aureodatabase>
 </protect>
@@ Line 99: / Line 105: @@
 ==Accession numbers==
-* <aureodatabase>protein GI</aureodatabase>
+*<aureodatabase>protein GI</aureodatabase>
-* <aureodatabase>protein UniProt</aureodatabase>
+*<aureodatabase>protein RefSeq</aureodatabase>
-* <aureodatabase>protein RefSeq</aureodatabase>
+*<aureodatabase>protein UniProt</aureodatabase>
 </protect>
@@ Line 107: / Line 113: @@
 ==Protein sequence==
-* <aureodatabase>protein sequence</aureodatabase>
+*<aureodatabase>protein sequence</aureodatabase>
 </protect>
 <protect>
-==Peptides==
+==Experimental data==
-* <aureodatabase>protein validated peptides</aureodatabase>
+*<aureodatabase>protein validated peptides</aureodatabase>
+*<aureodatabase>protein validated localization</aureodatabase>
+*<aureodatabase>protein validated quantitative data</aureodatabase>
+*<aureodatabase>protein partners</aureodatabase>
 </protect>
@@ Line 124: / Line 133: @@
 ==Operon==
-* <aureodatabase>operons</aureodatabase>
+*<aureodatabase>operons</aureodatabase>
 </protect>
@@ Line 130: / Line 139: @@
 ==Regulation==
-* <aureodatabase>sigma factors</aureodatabase>
+*<aureodatabase>regulators</aureodatabase>
-* <aureodatabase>regulators</aureodatabase>
 </protect>
@@ Line 137: / Line 145: @@
 ==Transcription pattern==
-* <aureodatabase>expression browser</aureodatabase>
+*<aureodatabase>expression browser</aureodatabase>
 </protect>
@@ Line 143: / Line 151: @@
 ==Protein synthesis (provided by Aureolib)==
-* <aureodatabase>protein synthesis Aureolib</aureodatabase>
+*<aureodatabase>protein synthesis Aureolib</aureodatabase>
 </protect>
 <protect>
-==Stability==
+==Protein stability==
-* <aureodatabase>protein half-life</aureodatabase>
+*<aureodatabase>protein half-life</aureodatabase>
 </protect>

Navigation menu

Latest revision as of 12:44, 11 March 2016

Contents

⊟Summary[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟DNA sequence[edit | edit source]

⊟Protein[edit | edit source]

⊟General[edit | edit source]

⊟Function[edit | edit source]

⊟Structure, modifications & cofactors[edit | edit source]

⊟Localization[edit | edit source]

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

⊟Experimental data[edit | edit source]

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Search

Navigation menu

Latest revision as of 12:44, 11 March 2016

⊟Summary[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟DNA sequence[edit | edit source]

⊟Protein[edit | edit source]

⊟General[edit | edit source]

⊟Function[edit | edit source]

⊟Structure, modifications & cofactors[edit | edit source]

⊟Localization[edit | edit source]

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

⊟Experimental data[edit | edit source]

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]