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Revision as of 20:59, 10 March 2016 by AureoSysAdmin (talk | contribs) (Text replacement - "gene Genbank" to "gene RefSeq")
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NCBI date : _

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS03990 [old locus tag: SACOL0776 ]
  • pan locus tag?: SAUPAN002603000
  • symbol: SACOL_RS03990
  • pan gene symbol?: —
  • synonym:
  • product: allophanate hydrolase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS03990 [old locus tag: SACOL0776 ]
  • symbol: SACOL_RS03990
  • product: allophanate hydrolase
  • replicon: chromosome
  • strand: +
  • coordinates: 796518..797228
  • length: 711
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq: WP_000708692 NCBI

⊟Phenotype[edit | edit source]

  • Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    ATGAAAATATATAGTCAAGGTGACCAAGCCATTGTAGTCGCAATTGAAAAAGAAGTATCT
    AAAAGTTTAACCGAAGATTTATTAACACTTCGCTCATATTTAATTGAACAAAATTATCCA
    TTTATTATAGAAATTGTGCCATCAGAATCAGACATGATGATTGTCTATGACGCAAGGGAT
    ATGATTAAACACCATAATATACAATCACCTTTTTTATACATGAAAGCACTAATAGAATCG
    ATTCATTTAAACATAAAACATGATTTTAACCAGCAAGATTTGATTGAAATACCAATTGTG
    TATGGTTCGAAATATGGTCCGGATTTAGAATCACTTTTAAAACATTACAAAATCAAGCTA
    GAAACTTTTATTGAATTACATTCTAAGGCGCAATATTTTGTTTCGATGATGGGATATTCA
    CCTGGGTTTCCTTATTTAACTGGATTAAATAAGAAATTGTATATTAATCACACGAGTAAA
    CAGAAAAAATTCATTCCAGCTGGTTCTGTAGTACTTGAAGGGAAAAAATGCGGTATTGTA
    ACTACGGATACAATTAATGATTGGTTAGTTATTGGTTATACACCATTATCACTTTTTAAT
    CCGAAAGAATCAGATTTCGCACGCTTAAAGTTAGGCGATAATATTAAATTTAGACCTATC
    AATGAAAATGAATTAGAAGTAGGAGCGTTTAAAGATGTCAATCATAATTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    711

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS03990 [old locus tag: SACOL0776 ]
  • symbol: SACOL_RS03990
  • description: allophanate hydrolase
  • length: 236
  • theoretical pI: 6.72663
  • theoretical MW: 27123.2
  • GRAVY: -0.191525

⊟Function[edit | edit source]

  • TIGRFAM:
    Hypothetical proteins Conserved sensor histidine kinase inhibitor, KipI family (TIGR00370; HMM-score: 142.4)
  • TheSEED: see SACOL0776
  • PFAM:
    Cyclophil-like (CL0475) CT_C_D; Carboxyltransferase domain, subdomain C and D (PF02682; HMM-score: 139.1)
    and 1 more
    no clan defined TINF2_N; TERF1-interacting nuclear factor 2 N-terminus (PF14973; HMM-score: 13.1)

⊟Structure, modifications & interactions[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • interaction partners:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001941
    • TAT(Tat/SPI): 0.000121
    • LIPO(Sec/SPII): 0.000375
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI: 446631346 NCBI
  • UniProt: see SACOL0776
  • protein Genbank : _
  • RefSeq: WP_000708692 NCBI

⊟Protein sequence[edit | edit source]

  • MKIYSQGDQAIVVAIEKEVSKSLTEDLLTLRSYLIEQNYPFIIEIVPSESDMMIVYDARDMIKHHNIQSPFLYMKALIESIHLNIKHDFNQQDLIEIPIVYGSKYGPDLESLLKHYKIKLETFIELHSKAQYFVSMMGYSPGFPYLTGLNKKLYINHTSKQKKFIPAGSVVLEGKKCGIVTTDTINDWLVIGYTPLSLFNPKESDFARLKLGDNIKFRPINENELEVGAFKDVNHN

⊟Peptides[edit | edit source]

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • sigma factors : _
  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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