From AureoWiki
Revision as of 09:08, 11 March 2016 by AureoSysAdmin (talk | contribs) (Text replacement - "* <aureodatabase>protein Genbank</aureodatabase> " to "")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search
PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS03370 [old locus tag: SACOL0652 ]
  • pan locus tag?: SAUPAN002450000
  • symbol: SACOL_RS03370
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS03370 [old locus tag: SACOL0652 ]
  • symbol: SACOL_RS03370
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 681807..682427
  • length: 621
  • essential: unknown other strains

Accession numbers[edit | edit source]

  • Location: NC_002951 (681807..682427) NCBI
  • BioCyc: G1G4B-700 BioCyc
  • MicrobesOnline: see SACOL0652

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    ATTAATAAGAATCCCAAATATAGAATTATCAAATACAAAGATGAATATTTGATGATTGAT
    TTAGTAAGTACATGGTTAGCACTCTTTTTCCCAATGATTAATTGGCTGATTCCAAAAAAG
    TACGTCAAAATCAGCGAAAAAGATTTTGAAACTTTAAACATTGTGAAGACAGCTAAAATC
    AATTCTTTTTGGCCAGTGGCAGGAAGTACGGTCTTATTTGGTGTTATGTTAAGAAGGTAT
    TCCCATTTATTTATCGTTAAATATGAATATAGTATAGTAATTTTAATTTGTTGCATCATA
    ATACTAGGTATTTTTCTGTTTTTTTTATATTTAAATCAAAAGTTAAAGTTACAAATCTAT
    AATGAAAACAAAAATAAAAGCAATAAGATAATCATATTTCCCACTTTAAAGAGTCTTTGT
    TTATCAATAGTTTTATATATTTATTTAGGTGGTGGTTCATTCTTTACTATTTATATGTTA
    TTGACGATTGAAGTTCAAAATATAATATTATTTATAACTTTGTTTGTAATATTTTTGTTT
    TTCTTATTTTTAAATATGTGCTCACTATATGACAATAAAGTTCATGTATTATTTAAATCA
    AATGGAATTGAAAAGTTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    621

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SACOL_RS03370 [old locus tag: SACOL0652 ]
  • symbol: SACOL_RS03370
  • description: hypothetical protein
  • length: 206
  • theoretical pI: 9.89406
  • theoretical MW: 24410.4
  • GRAVY: 0.681553

Function[edit | edit source]

  • TIGRFAM:
    tandem five-TM protein (TIGR01218; HMM-score: 164.5)
    and 1 more
    CcmD family protein (TIGR04391; HMM-score: 14)
  • TheSEED: see SACOL0652
  • PFAM:
    no clan defined DUF443; Protein of unknown function (DUF443) (PF04276; HMM-score: 188.9)
    and 2 more
    DUF4519; Domain of unknown function (DUF4519) (PF15012; HMM-score: 12.7)
    PV-1; PV-1 protein (PLVAP) (PF06637; HMM-score: 7.8)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 5
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.014242
    • TAT(Tat/SPI): 0.000311
    • LIPO(Sec/SPII): 0.00105
  • predicted transmembrane helices (TMHMM): 5

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MNKNPKYRIIKYKDEYLMIDLVSTWLALFFPMINWLIPKKYVKISEKDFETLNIVKTAKINSFWPVAGSTVLFGVMLRRYSHLFIVKYEYSIVILICCIIILGIFLFFLYLNQKLKLQIYNENKNKSNKIIIFPTLKSLCLSIVLYIYLGGGSFFTIYMLLTIEVQNIILFITLFVIFLFFLFLNMCSLYDNKVHVLFKSNGIEKF

Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]