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Revision as of 07:15, 11 March 2016 by AureoSysAdmin (talk | contribs) (Text replacement - "gene Genbank" to "gene RefSeq")
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NCBI date : _

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL2123 [new locus tag: SACOL_RS11110 ]
  • pan locus tag?: SAUPAN005427000
  • symbol: SACOL2123
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL2123 [new locus tag: SACOL_RS11110 ]
  • symbol: SACOL2123
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2184140..2184811
  • length: 672
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID: 3237459 NCBI
  • RefSeq: YP_186938 NCBI

⊟Phenotype[edit | edit source]

  • Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    ATGTCTTATAAAGCATATCCATTCTTTAGAGATATATTAATAAATGAATGTATTTATTTC
    GCCTCTAAAAATAAAAAACTAGTACGCCTAAATTATAAAAGTGAAGCGTATGTAGGCGTT
    TGGACAGAAGAAAGTGTGGCCGTATCATTTTTAACAAGTCGTGATATTCCATTTGATAAA
    GTTGTAAAAATGGACGTTGATCGTTTTGCTACTTATGAATTAGATGAATTGTTTGATGAA
    CAAGACCATATTATTATGAATCAAACAATGGAAGAAGAAGGGCATCTACTAAACGTTGTA
    GCTGTTACACAAGAAGTGATGACGGAATTAGATAAAATTAGAATCAAAGAATTTGTCCAA
    GATGTAGCGAAATATGATGAAGTATACGGCTTAACTAAAAAAGGTAGTAAGCAGTTTATT
    CTCATTAGTGAAAATGATAGCGACGAAAAAAAGCCGCATATTATGCCTGTATGGAGTATT
    AAAAACAGAGCGTTAAAAGTTCGAGATGAAGATTTTGAAGAGTGTGATTTAATTACGATT
    GAAGGTTCTGTTTTCGGAGAATGGCTAGATGAACTTAGAGATGATCATAAAGCCGTTGCG
    ATAGATTTAAAAACTGGCGTGGTTGGTACAATTGTTTCAGCGCAAAAATTGTCTAATGAA
    CTTACATTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    672

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL2123 [new locus tag: SACOL_RS11110 ]
  • symbol: SACOL2123
  • description: hypothetical protein
  • length: 223
  • theoretical pI: 4.48055
  • theoretical MW: 25855.3
  • GRAVY: -0.289238

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Hypothetical protein SAV2131
  • PFAM:
    no clan defined DUF2750; Protein of unknown function (DUF2750) (PF11042; HMM-score: 92)
    and 2 more
    DUF3256; Protein of unknown function (DUF3256) (PF11644; HMM-score: 13.1)
    Ferritin (CL0044) AurF; P-aminobenzoate N-oxygenase AurF (PF11583; HMM-score: 12.3)

⊟Structure, modifications & interactions[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • interaction partners:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003385
    • TAT(Tat/SPI): 0.000173
    • LIPO(Sec/SPII): 0.00056
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI: 57652153 NCBI
  • UniProt: A0A0H2X064 UniProt
  • protein Genbank : _
  • RefSeq: YP_186938 NCBI

⊟Protein sequence[edit | edit source]

  • MSYKAYPFFRDILINECIYFASKNKKLVRLNYKSEAYVGVWTEESVAVSFLTSRDIPFDKVVKMDVDRFATYELDELFDEQDHIIMNQTMEEEGHLLNVVAVTQEVMTELDKIRIKEFVQDVAKYDEVYGLTKKGSKQFILISENDSDEKKPHIMPVWSIKNRALKVRDEDFEECDLITIEGSVFGEWLDELRDDHKAVAIDLKTGVVGTIVSAQKLSNELTF

⊟Peptides[edit | edit source]

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • sigma factors : _
  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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