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m (Text replacement - "gene Genbank" to "gene RefSeq")
m (Text replacement - "* <aureodatabase>protein Genbank</aureodatabase> " to "")
 
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__TOC__
<protect>
<protect>
<aureodatabase>NCBI date</aureodatabase>
<aureodatabase>annotation</aureodatabase>


=Summary=
=Summary=


* <aureodatabase>organism</aureodatabase>
*<aureodatabase>organism</aureodatabase>
* <aureodatabase>locus</aureodatabase>
*<aureodatabase>locus</aureodatabase>
* <aureodatabase>pan locus</aureodatabase>
*<aureodatabase>pan locus</aureodatabase>
* <aureodatabase>gene symbol</aureodatabase>
*<aureodatabase>gene symbol</aureodatabase>
* <aureodatabase>pan gene symbol</aureodatabase>
*<aureodatabase>pan gene symbol</aureodatabase>
* <aureodatabase>gene synonyms</aureodatabase>
*<aureodatabase>gene synonyms</aureodatabase>
* <aureodatabase>product</aureodatabase>
*<aureodatabase>product</aureodatabase>
</protect>
</protect>


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==General==
==General==


* <aureodatabase>gene type</aureodatabase>
*<aureodatabase>gene type</aureodatabase>
* <aureodatabase>locus</aureodatabase>
*<aureodatabase>locus</aureodatabase>
* <aureodatabase>gene symbol</aureodatabase>
*<aureodatabase>gene symbol</aureodatabase>
* <aureodatabase>product</aureodatabase>
*<aureodatabase>product</aureodatabase>
* <aureodatabase>gene replicon</aureodatabase>
*<aureodatabase>gene replicon</aureodatabase>
* <aureodatabase>strand</aureodatabase>
*<aureodatabase>strand</aureodatabase>
* <aureodatabase>gene coordinates</aureodatabase>
*<aureodatabase>gene coordinates</aureodatabase>
* <aureodatabase>gene length</aureodatabase>
*<aureodatabase>gene length</aureodatabase>
* <aureodatabase>essential</aureodatabase>
*<aureodatabase>essential</aureodatabase>
*<aureodatabase>gene comment</aureodatabase>
</protect>
</protect>


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==Accession numbers==
==Accession numbers==


* <aureodatabase>gene GI</aureodatabase>
*<aureodatabase>gene GI</aureodatabase>
* <aureodatabase>gene RefSeq</aureodatabase>
*<aureodatabase>gene RefSeq</aureodatabase>
*<aureodatabase>gene BioCyc</aureodatabase>
*<aureodatabase>gene MicrobesOnline</aureodatabase>
</protect>
</protect>
   
   
<protect>  
<protect>
==Phenotype==
==Phenotype==
</protect>
</protect>
* Share your knowledge and add information here. [<span class="plainlinks">[http://www.protecs.uni-greifswald.de/aureowiki/index.php?title={{PAGENAMEE}}&action=edit&section=6 edit]</span>]
Share your knowledge and add information here. [<span class="plainlinks">[//aureowiki.med.uni-greifswald.de/index.php?title={{PAGENAMEE}}&veaction=edit&section=6 edit]</span>]


<protect>
<protect>
==DNA sequence==
==DNA sequence==


* <aureodatabase>gene sequence</aureodatabase>
*<aureodatabase>gene sequence</aureodatabase>
</protect>
</protect>


<protect>
<protect>
<aureodatabase>RNA regulated operons</aureodatabase>
</protect>


<protect>
=Protein=
=Protein=
<aureodatabase>protein 3D view</aureodatabase>
<aureodatabase>protein 3D view</aureodatabase>
==General==
==General==


* <aureodatabase>locus</aureodatabase>
*<aureodatabase>locus</aureodatabase>
* <aureodatabase>protein symbol</aureodatabase>
*<aureodatabase>protein symbol</aureodatabase>
* <aureodatabase>protein description</aureodatabase>
*<aureodatabase>protein description</aureodatabase>
* <aureodatabase>protein length</aureodatabase>
*<aureodatabase>protein length</aureodatabase>
* <aureodatabase>theoretical pI</aureodatabase>
*<aureodatabase>theoretical pI</aureodatabase>
* <aureodatabase>theoretical MW</aureodatabase>
*<aureodatabase>theoretical MW</aureodatabase>
* <aureodatabase>GRAVY</aureodatabase>
*<aureodatabase>GRAVY</aureodatabase>
</protect>
</protect>


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==Function==
==Function==


* <aureodatabase>protein reaction</aureodatabase>
*<aureodatabase>protein reaction</aureodatabase>
* <aureodatabase>protein TIGRFAM</aureodatabase>
*<aureodatabase>protein TIGRFAM</aureodatabase>
* <aureodatabase>protein TheSeed</aureodatabase>
*<aureodatabase>protein TheSeed</aureodatabase>
* <aureodatabase>protein PFAM</aureodatabase>
*<aureodatabase>protein PFAM</aureodatabase>
</protect>
</protect>


<protect>
<protect>
==Structure, modifications & interactions==
==Structure, modifications & cofactors==


* <aureodatabase>protein domains</aureodatabase>
*<aureodatabase>protein domains</aureodatabase>
* <aureodatabase>protein modifications</aureodatabase>
*<aureodatabase>protein modifications</aureodatabase>
* <aureodatabase>protein cofactors</aureodatabase>
*<aureodatabase>protein cofactors</aureodatabase>
* <aureodatabase>protein effectors</aureodatabase>
*<aureodatabase>protein effectors</aureodatabase>
* <aureodatabase>protein partners</aureodatabase>
*<aureodatabase>protein regulated operons</aureodatabase>
</protect>
</protect>


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==Localization==
==Localization==


* <aureodatabase>protein Psortb</aureodatabase>
*<aureodatabase>protein Psortb</aureodatabase>
* <aureodatabase>protein LocateP</aureodatabase>
*<aureodatabase>protein LocateP</aureodatabase>
* <aureodatabase>protein SignalP</aureodatabase>
*<aureodatabase>protein SignalP</aureodatabase>
* <aureodatabase>protein TMHMM</aureodatabase>
*<aureodatabase>protein TMHMM</aureodatabase>
</protect>
</protect>


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==Accession numbers==
==Accession numbers==


* <aureodatabase>protein GI</aureodatabase>
*<aureodatabase>protein GI</aureodatabase>
* <aureodatabase>protein UniProt</aureodatabase>
*<aureodatabase>protein RefSeq</aureodatabase>
* <aureodatabase>protein Genbank</aureodatabase>
*<aureodatabase>protein UniProt</aureodatabase>
* <aureodatabase>protein RefSeq</aureodatabase>
</protect>
</protect>


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==Protein sequence==
==Protein sequence==


* <aureodatabase>protein sequence</aureodatabase>
*<aureodatabase>protein sequence</aureodatabase>
</protect>
</protect>


<protect>
<protect>
==Peptides==
==Experimental data==


* <aureodatabase>protein validated peptides</aureodatabase>
*<aureodatabase>protein validated peptides</aureodatabase>
*<aureodatabase>protein validated localization</aureodatabase>
*<aureodatabase>protein validated quantitative data</aureodatabase>
*<aureodatabase>protein partners</aureodatabase>
</protect>
</protect>


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==Operon==
==Operon==


* <aureodatabase>operons</aureodatabase>
*<aureodatabase>operons</aureodatabase>
</protect>
</protect>


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==Regulation==
==Regulation==


* <aureodatabase>sigma factors</aureodatabase>
*<aureodatabase>regulators</aureodatabase>
* <aureodatabase>regulators</aureodatabase>
</protect>
</protect>


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==Transcription pattern==
==Transcription pattern==


* <aureodatabase>expression browser</aureodatabase>
*<aureodatabase>expression browser</aureodatabase>
</protect>
</protect>


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==Protein synthesis (provided by Aureolib)==
==Protein synthesis (provided by Aureolib)==


* <aureodatabase>protein synthesis Aureolib</aureodatabase>
*<aureodatabase>protein synthesis Aureolib</aureodatabase>
</protect>
</protect>


<protect>
<protect>
==Stability==
==Protein stability==


* <aureodatabase>protein half-life</aureodatabase>
*<aureodatabase>protein half-life</aureodatabase>
</protect>
</protect>


Latest revision as of 12:20, 11 March 2016

NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL1914 [new locus tag: SACOL_RS09855 ]
  • pan locus tag?: SAUPAN004792000
  • symbol: SACOL1914
  • pan gene symbol?: queG
  • synonym:
  • product: iron-sulfur cluster-binding protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL1914 [new locus tag: SACOL_RS09855 ]
  • symbol: SACOL1914
  • product: iron-sulfur cluster-binding protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1967729..1968856
  • length: 1128
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    TTGGATACAAAGCAATTAAAGCAAGATATCATTGACTATGCATATACAATTGGTATCGAC
    AGTATTGGATTTACTACTGCCGATCCCTTTGATGAATTGAAGCAAAAGCTAGAAGCATAT
    CATGCAAATGGTTATGCCTCAGGATTTGAAGAATCTGATATTGCTTTACGAACGGAGCCT
    AAATTATCCTTACCAACAGCAAGGTCAATCATAGCAATTGCAGTTGGTTATCCTAACAAA
    CTGAAAGGTGCACCTAAGAGTGTTAGAGGTGATCGCAGAGGCTTATTTGCTAGAGCATCG
    TGGGGTCAAGATTATCATACAATTATGCGTAAACGATTAGACATGTTAGCTGCATTTATT
    GAATCTAAAGTTCCAGATGTTGAAATCAAATCTATGGTAGATACGGGTGTATTATCAGAT
    AGGGCAGTAGCAGAACGTGCAGGTTTAGGATTTGTTGGTCGTAATGGCTTTGTCATCAAT
    CCTAAACTAGGAACATGGACATACCTCGGTGAAATGTTAGTCAGTATACCTTTTGAACCT
    GATGATCCATTATTAGATAGCTGTGGTGATTGTACAATTTGTGTTGATCGTTGTCCAACA
    AGTGCATTAGTTGGAAATGGCCAATTAAATAGTCAGAAATGCATTAGTTTTTTAACGCAA
    ACAAAAGGCTATATGCCTGACCAATATCGTTATAAAATTGGGAATAGATTATATGGTTGC
    GATACGTGTCAACAAGTTTGTCCGAAAAATAGAGGTATTAATACCGAACAAGATGACATC
    ATTTTGGAACCAGAAATTTTAAAGCCAAGATTAGTACCTTTACTACGTATGTCTAATAAA
    GAATTCAAACAAACATATGGTCACCTTGCAGGTGCTTGGCGTGGTAAAAAGCCGATACAA
    CGAAATGCTATTTTAGCATTGGCGCATTTTAATGAAGTGGATGCAATTCCAGAATTGAAA
    AAAGTTGCAACAACAGATGAAAGACCGTTGATTCGAGCAACTGCTTATTGGGCCATTGGT
    CAAATTCTTGGGGAAGAAGCAAGAGATTTTATCAATGCTAATTATGATCAAGAGGATGCA
    GAAGTTCAGAATGAAATGATAAAAGGATTAGACACAAGGAGAGAATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1128

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL1914 [new locus tag: SACOL_RS09855 ]
  • symbol: SACOL1914
  • description: iron-sulfur cluster-binding protein
  • length: 375
  • theoretical pI: 6.17984
  • theoretical MW: 41935.6
  • GRAVY: -0.375467

⊟Function[edit | edit source]

  • reaction:
    EC 1.17.99.6?  ExPASy
    Epoxyqueuosine reductase Queuosine34 in tRNA + acceptor + H2O = epoxyqueuosine34 in tRNA + reduced acceptor
  • TIGRFAM:
    Genetic information processing Protein synthesis tRNA and rRNA base modification epoxyqueuosine reductase (TIGR00276; EC 1.-.-.-; HMM-score: 401.3)
    and 11 more
    reductive dehalogenase (TIGR02486; EC 1.97.1.-; HMM-score: 45.2)
    2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family (TIGR02179; HMM-score: 19.8)
    Metabolism Energy metabolism Electron transport electron transport complex, RnfABCDGE type, B subunit (TIGR01944; HMM-score: 15.5)
    Metabolism Energy metabolism Electron transport NADH-quinone oxidoreductase, chain I (TIGR01971; HMM-score: 11.7)
    Metabolism Energy metabolism Chemoautotrophy CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit (TIGR00314; EC 1.2.99.2; HMM-score: 10.7)
    Unknown function General archaeoflavoprotein, MJ0208 family (TIGR02700; HMM-score: 10.5)
    pyruvate:ferredoxin (flavodoxin) oxidoreductase (TIGR02176; EC 1.2.7.1; HMM-score: 7.7)
    Genetic information processing Protein fate Protein modification and repair glycine radical enzyme activase, YjjW family (TIGR04041; EC 1.97.1.-; HMM-score: 6.9)
    Metabolism Central intermediary metabolism Nitrogen fixation ferredoxin III, nif-specific (TIGR02936; HMM-score: 5.5)
    methylamine methyltransferase corrinoid protein reductive activase (TIGR04270; HMM-score: 3.7)
    Metabolism Energy metabolism Methanogenesis putative methanogenesis marker 16 metalloprotein (TIGR03287; HMM-score: 2.6)
  • TheSEED  :
    • tRNA epoxyqueuosine(34) reductase (EC 1.17.99.6)
    Respiration Respiration - no subcategory Soluble cytochromes and functionally related electron carriers  Iron-sulfur cluster-binding protein
    and 2 more
    RNA Metabolism RNA processing and modification Queuosine-Archaeosine Biosynthesis  Epoxyqueuosine (oQ) reductase QueG
    RNA Metabolism RNA processing and modification Queuosine-Archaeosine Biosynthesis  tRNA epoxyqueuosine(34) reductase (EC 1.17.99.6)
  • PFAM:
    no clan defined DUF1730; Domain of unknown function (DUF1730) (PF08331; HMM-score: 62.9)
    4Fe-4S (CL0344) Fer4_16; 4Fe-4S double cluster binding domain (PF13484; HMM-score: 54.7)
    and 16 more
    TPR (CL0020) HEAT_2; HEAT repeats (PF13646; HMM-score: 32)
    4Fe-4S (CL0344) Fer4_9; 4Fe-4S dicluster domain (PF13187; HMM-score: 26.1)
    Fer4_7; 4Fe-4S dicluster domain (PF12838; HMM-score: 24.8)
    Fer4_10; 4Fe-4S dicluster domain (PF13237; HMM-score: 24.1)
    Fer4; 4Fe-4S binding domain (PF00037; HMM-score: 18.6)
    Fer4_21; 4Fe-4S dicluster domain (PF14697; HMM-score: 17.9)
    Fer4_6; 4Fe-4S binding domain (PF12837; HMM-score: 14.8)
    TPR (CL0020) HEAT_PBS; PBS lyase HEAT-like repeat (PF03130; HMM-score: 13.1)
    HEAT; HEAT repeat (PF02985; HMM-score: 12.9)
    FMN-dep-NRtase (CL0529) Dehalogenase; Reductive dehalogenase subunit (PF13486; HMM-score: 12.7)
    4Fe-4S (CL0344) Fer4_2; 4Fe-4S binding domain (PF12797; HMM-score: 12.5)
    Fer4_8; 4Fe-4S dicluster domain (PF13183; HMM-score: 12.3)
    Fer4_3; 4Fe-4S binding domain (PF12798; HMM-score: 11.6)
    Fer4_17; 4Fe-4S dicluster domain (PF13534; HMM-score: 11.2)
    Fer4_13; 4Fe-4S single cluster domain of Ferredoxin I (PF13370; HMM-score: 10.1)
    Fer4_18; 4Fe-4S dicluster domain (PF13746; HMM-score: 7.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 1.78
    • Cytoplasmic Membrane Score: 8.16
    • Cellwall Score: 0.06
    • Extracellular Score: 0.01
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.010276
    • TAT(Tat/SPI): 0.000877
    • LIPO(Sec/SPII): 0.001214
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MDTKQLKQDIIDYAYTIGIDSIGFTTADPFDELKQKLEAYHANGYASGFEESDIALRTEPKLSLPTARSIIAIAVGYPNKLKGAPKSVRGDRRGLFARASWGQDYHTIMRKRLDMLAAFIESKVPDVEIKSMVDTGVLSDRAVAERAGLGFVGRNGFVINPKLGTWTYLGEMLVSIPFEPDDPLLDSCGDCTICVDRCPTSALVGNGQLNSQKCISFLTQTKGYMPDQYRYKIGNRLYGCDTCQQVCPKNRGINTEQDDIILEPEILKPRLVPLLRMSNKEFKQTYGHLAGAWRGKKPIQRNAILALAHFNEVDAIPELKKVATTDERPLIRATAYWAIGQILGEEARDFINANYDQEDAEVQNEMIKGLDTRRE

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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